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Stills target.phil - Revision history
2024-03-28T19:01:30Z
Revision history for this page on the wiki
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http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=Stills_target.phil&diff=968&oldid=prev
Aaron: Created page with "<pre> # -*- mode: conf -*- distl_highres_limit = 3 force_method2_resolution_limit = 3 beam_search_scope = 0.5 difflimit_sigma_cutoff = 2 distl_minimum_number_spots_for_inde..."
2015-08-11T17:26:04Z
<p>Created page with "<pre> # -*- mode: conf -*- distl_highres_limit = 3 force_method2_resolution_limit = 3 beam_search_scope = 0.5 difflimit_sigma_cutoff = 2 distl_minimum_number_spots_for_inde..."</p>
<p><b>New page</b></p><div><pre><br />
<br />
# -*- mode: conf -*-<br />
<br />
distl_highres_limit = 3<br />
force_method2_resolution_limit = 3<br />
<br />
beam_search_scope = 0.5<br />
difflimit_sigma_cutoff = 2<br />
distl_minimum_number_spots_for_indexing = 30<br />
lepage_max_delta = 3<br />
model_refinement_minimum_N = 20<br />
mosaicity_limit = 0.5<br />
mosflm_rmsd_tolerance = 5<br />
rmsd_tolerance = 5<br />
distl_permit_binning=False<br />
<br />
# Set to True to pick up second lattice, if present.<br />
#indexing.outlier_detection.switch = True<br />
<br />
# Suppress intermediate output files.<br />
refinements_pickle = None<br />
spots_pickle = None<br />
subgroups_pickle = None<br />
<br />
distl {<br />
bins.verbose = True<br />
res.outer = 3<br />
<br />
minimum_signal_height = 5<br />
minimum_spot_area = 2<br />
minimum_spot_height = 5<br />
spot_area_maximum_factor = 200<br />
compactness_filter = False<br />
method2_cutoff_percentage = 5<br />
<br />
# Avoids intensity filter.<br />
peak_intensity_maximum_factor = 10000<br />
}<br />
<br />
indexing {<br />
# Set to True to generate correction vectors.<br />
verbose_cv = True<br />
}<br />
<br />
integration {<br />
background_factor = 2<br />
detector_gain = 1<br />
<br />
model = user_supplied<br />
guard_width_sq=4<br />
spotfinder_subset=spots_non-ice<br />
greedy_integration_limit=True<br />
combine_sym_constraints_and_3D_target=True<br />
#enable_residual_map=True<br />
#enable_residual_scatter=True<br />
spot_prediction=dials<br />
# DECTRIS parallax<br />
signal_penetration = 0.5<br />
mosaic {<br />
refinement_target=ML<br />
kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing rate<br />
<br />
domain_size_lower_limit=4<br />
enable_rotational_target_highsym=False<br />
# plot delta psi vs. 2theta<br />
#enable_AD14F7B=True<br />
#enable_simplex=True<br />
}<br />
#montecarlo_integration_limit=2.5<br />
}</div>
Aaron