User contributions
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- 23:53, 23 March 2016 (diff | hist) . . (+82) . . Cxi02416 calibration (→Evaluate metrology)
- 23:51, 23 March 2016 (diff | hist) . . (-13) . . Cxi02416 calibration (→Further indexing and refinement (v3))
- 23:50, 23 March 2016 (diff | hist) . . (+434) . . Cxi02416 calibration (→Further indexing and refinement (v3))
- 23:39, 23 March 2016 (diff | hist) . . (+164) . . Cxi02416 calibration
- 23:30, 23 March 2016 (diff | hist) . . (+2,506) . . Cxi02416 calibration (→Evaluate metrology)
- 22:24, 23 March 2016 (diff | hist) . . (+1,057) . . Cxi02416 calibration (→Evaluate metrology)
- 22:04, 23 March 2016 (diff | hist) . . (+71) . . Cxi02416 calibration (→Refine metrology (v2))
- 22:03, 23 March 2016 (diff | hist) . . (+1,238) . . Cxi02416 calibration
- 17:53, 22 March 2016 (diff | hist) . . (+1,128) . . Cxi02416 calibration
- 17:35, 22 March 2016 (diff | hist) . . (+12) . . Cxi02416 calibration (→Refine metrology (v2))
- 17:34, 22 March 2016 (diff | hist) . . (+22) . . Cxi02416 calibration (→Index using v1 metrology)
- 17:33, 22 March 2016 (diff | hist) . . (+18) . . Cxi02416 calibration (→Refine metrology (v1))
- 17:32, 22 March 2016 (diff | hist) . . (+18) . . Cxi02416 calibration (→Initial indexing)
- 01:31, 22 March 2016 (diff | hist) . . (+47) . . m Cxi02416 calibration (→Index using v1 metrology)
- 01:29, 22 March 2016 (diff | hist) . . (+9) . . m Cxi02416 calibration (→Refine metrology (v1))
- 01:27, 22 March 2016 (diff | hist) . . (-56) . . Cxi02416 calibration (→Initial indexing)
- 01:25, 22 March 2016 (diff | hist) . . (+663) . . N Cxi02416-refine.phil (Created page with "<pre> refinement { refinery.engine = SparseLevMar parameterisation { beam.fix=all #detector.fix_list=Dist,Tau1 # fix detector rotz and distance detector.fix_li...")
- 01:24, 22 March 2016 (diff | hist) . . (+1,390) . . N Cxi02416-lyso-t002.phil (Created page with "<pre> input { address=CxiDs2.0:Cspad.0 } dispatch.reindex_strong=True format { file_format=cbf cbf { detz_offset=568 common_mode.algorithm=custom common_mode...") (current)
- 01:17, 22 March 2016 (diff | hist) . . (+80) . . Cxi02416 calibration (→Deploy metrology)
- 01:15, 22 March 2016 (diff | hist) . . (+95) . . Cxi02416 calibration (→Deploy metrology)
- 01:14, 22 March 2016 (diff | hist) . . (+126) . . Cxi02416 calibration (→Evaluate metrology)
- 01:13, 22 March 2016 (diff | hist) . . (+665) . . Cxi02416 calibration (→Refine metrology (v2))
- 01:08, 22 March 2016 (diff | hist) . . (+1,663) . . Cxi02416 calibration (→Index using v1 metrology)
- 00:53, 22 March 2016 (diff | hist) . . (+133) . . Cxi02416 calibration (→Refine metrology (v1))
- 00:51, 22 March 2016 (diff | hist) . . (+651) . . Cxi02416 calibration (→Refine metrology (v1))
- 22:00, 21 March 2016 (diff | hist) . . (+1,289) . . Cxi02416 calibration (→Refine metrology (v1))
- 21:47, 21 March 2016 (diff | hist) . . (+1,444) . . Cxi02416 calibration
- 21:26, 21 March 2016 (diff | hist) . . (+283) . . N Cxi02416 calibration (Created page with "Calibration of cspad using cxi02416, cctbx.xfel and DIALS This page is not intended as a manual for processing XFEL data using cctbx.xfel and DIALS. Rather, this is a docume...")
- 18:11, 7 December 2015 (diff | hist) . . (+5) . . File formats (→Creating CSPAD CBFs from XTC streams)
- 18:06, 7 December 2015 (diff | hist) . . (+896) . . File formats (→Creating CSPAD CBFs from XTC streams)
- 21:54, 30 November 2015 (diff | hist) . . (+13) . . m File formats (→Integration pickles)
- 21:54, 30 November 2015 (diff | hist) . . (+13) . . m File formats (→Image pickles)
- 02:39, 30 November 2015 (diff | hist) . . (+991) . . File formats (→CSPAD CBFs)
- 02:10, 30 November 2015 (diff | hist) . . (+1) . . m File formats (→Introduction)
- 02:10, 30 November 2015 (diff | hist) . . (+1,494) . . N File formats (Created page with "This page is under construction == Introduction == ''cctbx.xfel'''s current native file formats, image pickles and integration pickles, are mainly intermediate file formats...")
- 01:48, 30 November 2015 (diff | hist) . . (+84) . . Main Page (→cctbx.xfel resources)
- 18:19, 11 November 2015 (diff | hist) . . (+4) . . Configure cctbx.xfel from existing Phenix install
- 06:27, 27 October 2015 (diff | hist) . . (-15) . . Configure cctbx.xfel from existing Phenix install
- 00:11, 27 October 2015 (diff | hist) . . (-8) . . Configure cctbx.xfel from existing Phenix install
- 17:29, 18 September 2015 (diff | hist) . . (-39) . . Main Page (→cctbx.xfel resources)
- 20:33, 11 August 2015 (diff | hist) . . (+1) . . Configure cctbx.xfel from existing Phenix install
- 20:33, 11 August 2015 (diff | hist) . . (+306) . . Configure cctbx.xfel from existing Phenix install
- 19:49, 11 August 2015 (diff | hist) . . (+544) . . N Configure cctbx.xfel from existing Phenix install (Created page with "Much of the code to run ''cctbx.xfel'' is already bundled in the latest phenix installers. The only missing package is DIALS. Here's how to get ''cctbx.xfel'' configured fro...")
- 18:43, 11 August 2015 (diff | hist) . . (+166) . . Main Page (→cctbx.xfel resources)
- 17:28, 11 August 2015 (diff | hist) . . (+1,328) . . N Prime.phil (Created page with "<pre> data=<path to results folder>/001 run_no = 001_001 title = sample name averaging_engine=cpp scale { d_min = 3.3 d_max = 45 sigma_min = 1.5 } postref { scale {...") (current)
- 17:27, 11 August 2015 (diff | hist) . . (+136) . . Processing Blog (→Processing stills) (current)
- 17:26, 11 August 2015 (diff | hist) . . (+1,572) . . N Stills target.phil (Created page with "<pre> # -*- mode: conf -*- distl_highres_limit = 3 force_method2_resolution_limit = 3 beam_search_scope = 0.5 difflimit_sigma_cutoff = 2 distl_minimum_number_spots_for_inde...") (current)
- 17:24, 11 August 2015 (diff | hist) . . (-37) . . Processing Blog (→Processing stills)
- 17:19, 11 August 2015 (diff | hist) . . (+3,724) . . Processing Blog
- 17:15, 7 August 2015 (diff | hist) . . (+36) . . Processing L498 thermolysin (→Merging all integrated images) (current)
- 17:14, 7 August 2015 (diff | hist) . . (+24) . . Resolving an Indexing Ambiguity (→Apply Reindexing Operators and Merge) (current)
- 17:14, 7 August 2015 (diff | hist) . . (+24) . . Resolving an Indexing Ambiguity (→Sort the Lattices)
- 17:13, 7 August 2015 (diff | hist) . . (+24) . . Resolving an Indexing Ambiguity (→Create a Database of Observations)
- 17:02, 7 August 2015 (diff | hist) . . (+20) . . Advanced Merging (→Use case 2: New structure) (current)
- 17:02, 7 August 2015 (diff | hist) . . (+18) . . Advanced Merging (→Use case 1: Isomorphous replacement)
- 17:22, 28 May 2015 (diff | hist) . . (+6) . . Set up PSDM software
- 18:35, 23 May 2015 (diff | hist) . . (+457) . . Serial XFEL Crystallography References
- 17:37, 8 May 2015 (diff | hist) . . (-5) . . Preparatory steps pyana version (→Running and testing the command) (current)
- 17:35, 8 May 2015 (diff | hist) . . (-2) . . Indexing and integration (→Processing the tutorial data) (current)
- 20:26, 1 May 2015 (diff | hist) . . (+71) . . Ha14 Tutorials
- 20:54, 9 April 2015 (diff | hist) . . (+219) . . Ha14 installation (→Prerequisites)
- 16:54, 20 March 2015 (diff | hist) . . (-5,104) . . Installation Draft (Redirected page to Installation) (current)
- 18:27, 16 March 2015 (diff | hist) . . (+741) . . Phil
- 19:09, 5 March 2015 (diff | hist) . . (-58) . . Setup (→Prerequisities) (current)
- 19:08, 5 March 2015 (diff | hist) . . (-352) . . Main Page
- 19:07, 5 March 2015 (diff | hist) . . (-1,483) . . Ha14 installation
- 08:20, 28 February 2015 (diff | hist) . . (+28) . . Installation Draft (→Installation on a non-PSDM system)
- 08:19, 28 February 2015 (diff | hist) . . (+178) . . Installation Draft (re-write)
- 16:47, 26 February 2015 (diff | hist) . . (+1,068) . . Installation Draft (Add installing using your own python.)
- 12:59, 26 February 2015 (diff | hist) . . (+7) . . m Installation Draft
- 12:55, 26 February 2015 (diff | hist) . . (+3,849) . . N Installation Draft (First draft)
- 10:29, 26 February 2015 (diff | hist) . . (+154) . . m Ha14 installation
- 09:30, 26 February 2015 (diff | hist) . . (-73) . . m Set up PSDM software
- 20:19, 23 December 2014 (diff | hist) . . (+283) . . Main Page
- 03:43, 19 December 2014 (diff | hist) . . (+1) . . Preparatory steps (→Running and testing the command) (current)
- 03:00, 12 December 2014 (diff | hist) . . (0) . . Indexing and integration
- 01:58, 12 December 2014 (diff | hist) . . (-92) . . Preparatory steps (→Creating a mask image)
- 01:55, 12 December 2014 (diff | hist) . . (+6) . . Preparatory steps (→Create a dark average)
- 01:54, 12 December 2014 (diff | hist) . . (+551) . . N Average.cfg (Created page with " [psana] modules = cspad_mod.CsPadCalib CSPadPixCoords.CSPadNDArrProducer pyimgalgos.cspad_gainmap [cspad_mod.CsPadCalib] inputKey = outputKey = calibrated...") (current)
- 01:52, 12 December 2014 (diff | hist) . . (-969) . . Preparatory steps (→Averaging an experimental light run)
- 01:40, 12 December 2014 (diff | hist) . . (-655) . . Preparatory steps (→Create a dark average)
- 01:05, 12 December 2014 (diff | hist) . . (-275) . . Preparatory steps
- 01:01, 12 December 2014 (diff | hist) . . (+350) . . N Dark.cfg (Created page with " # This config file only invokes a psana module that loads the data from # the XTC stream and prepares it for cxi.mpi_average. [psana] modules = CSPadPixCoords.CSPadNDAr...") (current)
- 00:46, 12 December 2014 (diff | hist) . . (+12,482) . . Preparatory steps
- 00:46, 12 December 2014 (diff | hist) . . (-45) . . Preparatory steps (Blanked the page)
- 00:40, 12 December 2014 (diff | hist) . . (0) . . m Preparatory steps pyana version (Aaron moved page Preparatory steps to Preparatory steps pyana version)
- 00:40, 12 December 2014 (diff | hist) . . (+45) . . N Preparatory steps (Aaron moved page Preparatory steps to Preparatory steps pyana version)
- 00:37, 12 December 2014 (diff | hist) . . (+20) . . Ha14 Tutorials
- 00:25, 12 December 2014 (diff | hist) . . (0) . . Overview (→Phil) (current)
- 00:24, 12 December 2014 (diff | hist) . . (-59) . . Overview (→pyana: changed to psana)
- 00:20, 12 December 2014 (diff | hist) . . (+1) . . m Main Page
- 17:01, 30 September 2014 (diff | hist) . . (+943) . . Indexing individual stills
- 18:40, 23 September 2014 (diff | hist) . . (0) . . Overview (→pyana)
- 01:13, 23 August 2014 (diff | hist) . . (+134) . . 2014 Prerequisites (→Set up PSDM) (current)
- 21:57, 22 August 2014 (diff | hist) . . (+754) . . 2014 Prerequisites
- 21:09, 22 August 2014 (diff | hist) . . (+441) . . LB67 Thermolysin (→Detector distance)
- 16:20, 22 August 2014 (diff | hist) . . (+63) . . 2014 Tutorials (→Getting Started)
- 05:57, 22 August 2014 (diff | hist) . . (+447) . . Preparatory steps pyana version (→Creating a mask image)
- 17:34, 21 August 2014 (diff | hist) . . (+4) . . LB67 Thermolysin (→Detector distance)
- 17:32, 21 August 2014 (diff | hist) . . (+740) . . LB67 Thermolysin (→Detector distance)
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