Difference between revisions of "Ha14 Tutorials"
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* [[Indexing and integration]]. Optional steps: | * [[Indexing and integration]]. Optional steps: | ||
** Real-time [[progress monitoring]]. | ** Real-time [[progress monitoring]]. | ||
| + | ** Streaming [[data viewer]]. | ||
** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''. | ** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''. | ||
* [[Merging]] | * [[Merging]] | ||
* [[Advanced Merging]]: Use cases for isomorphous replacement and <em>de novo</em> structure | * [[Advanced Merging]]: Use cases for isomorphous replacement and <em>de novo</em> structure | ||
* [[Resolving an Indexing Ambiguity]] | * [[Resolving an Indexing Ambiguity]] | ||
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Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings. | Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings. | ||
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| + | [[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper. | ||
Revision as of 21:46, 5 May 2014
These tutorials assumes the steps outlined in setup have been followed first. Processing xfel data at LCLS consists of four steps:
- Preparatory steps
- Metrology refinement
- Indexing and integration. Optional steps:
- Real-time progress monitoring.
- Streaming data viewer.
- Configuring specific spotfinder, indexing and integration parameters using phil.
- Merging
- Advanced Merging: Use cases for isomorphous replacement and de novo structure
- Resolving an Indexing Ambiguity
Additionally, cctbx.xfel utilizes phil files to manage its configuration settings.
Processing L498 thermolysin details instructions to reproduce the results published in the forthcoming cctbx.xfel paper.
