Difference between revisions of "Ha14 Tutorials"
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These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps: | These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps: | ||
| − | * [[Preparatory steps]] | + | * Averaging and other [[Preparatory steps]] |
* [[Metrology refinement]] | * [[Metrology refinement]] | ||
* [[Indexing and integration]]. Optional steps: | * [[Indexing and integration]]. Optional steps: | ||
Revision as of 00:37, 12 December 2014
These tutorials assumes the steps outlined in setup have been followed first. Processing xfel data at LCLS consists of four steps:
- Averaging and other Preparatory steps
- Metrology refinement
- Indexing and integration. Optional steps:
- Real-time progress monitoring.
- Streaming data viewer.
- Configuring specific spotfinder, indexing and integration parameters using phil.
- Merging
- Advanced Merging: Use cases for isomorphous replacement and de novo structure
- Resolving an Indexing Ambiguity
Additionally, cctbx.xfel utilizes phil files to manage its configuration settings.
Processing L498 thermolysin details instructions to reproduce the results published in the forthcoming cctbx.xfel paper.
