Difference between revisions of "Gd-Lysozyme-t005.phil"

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integration {
 
integration {
 
   subpixel_joint_model {
 
   subpixel_joint_model {
−
  rotations= \
+
rotations= \
−
   0.09674731   0.07989730   -0.19901338   -0.20726174 \
+
   0.10380122   0.10291038   -0.19982133   -0.18008646 \
−
  -0.23830834   -0.54561116   -0.32254118   -0.23491938 \
+
  -0.43791824   -0.58018549   -0.24658316   -0.22181574 \
−
  -0.38213480   -0.40568805   0.00000000   -0.38117534 \
+
  -0.34491032   -0.37553759   0.00000000   0.42764855 \
−
  -0.04345543    0.03274763   -0.11864964   -0.09977684 \
+
  -0.01491891  -0.00892137   -0.12581056   -0.08425222 \
−
   0.36115415   0.37260401   0.05477929   0.11149904 \
+
   0.35278979   0.35644847   0.07284276   0.10641281 \
−
-0.01711986   0.04739852   0.09445341   0.03838210 \
+
  0.03768521   0.10429154   0.06654312   0.05320079 \
−
   0.32400027   0.13304732   0.00000000  -0.65457856 \
+
   0.13813717   0.09751810   0.00000000  -0.13679390 \
−
   0.08287607   0.07008890   -0.03954289   -0.03622002 \
+
   0.04795791   0.11186736   -0.00769637   -0.04521222 \
−
  -0.00756307   -0.01077960   -0.08730015   -0.08697513 \
+
  -0.00644644   -0.00599834   -0.07619162   -0.07073085 \
−
  0.02778883   -0.13734546   0.03048996   0.02011849 \
+
-0.00204618   -0.16888531   0.12977948   0.03760563 \
−
-0.07152487   0.29026432   0.00000000    0.06048312 \
+
  0.22991251   0.32668426   0.00000000    0.00000000 \
−
   0.13779893   0.13067054   -0.16007059   -0.18625599 \
+
   0.08698662   0.04886487   -0.14516163   -0.16477543 \
−
   0.03336204   0.00450910   0.15636569   0.14043021 \
+
   0.03320451   0.01395237   0.15013794   0.15040198 \
−
  -0.25321101   -0.29161931   -0.14166711   -0.11677828 \
+
  -0.17016768   -0.32421089   -0.10723501   -0.12773618 \
−
   0.17978186   0.25283190   0.00000000    0.16777737 \
+
   0.23372254   0.23125299   0.00000000    0.80630260 \
−
  -0.18476683   -0.20782213   -0.19189638   -0.17657794 \
+
  -0.20873711   -0.20189223   -0.18032888   -0.18382739 \
  
 
translations= \
 
translations= \
−
   0.01645599   0.06357114   0.31182856   -0.18587159 \
+
   0.06711026   0.27009565   0.38742475   -0.06444760 \
−
  -0.33064024  -0.01687369  -0.12924445   0.79448784 \
+
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−
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+
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−
  -0.45668958   0.83076082   0.20661251   0.13509025 \
+
  -0.37892096   0.21617004   0.26633915   0.05654973 \
−
   1.11720423   1.63726722    0.24337533   -0.16778626 \
+
   0.99685077   0.81961866  -0.17024629   -0.56801149 \
−
   0.00000000    0.00000000  -1.58479802   2.73609856 \
+
   0.00000000    0.00000000  -1.50875590   0.21053766 \
−
   0.61802135   0.93311678    0.28939476   0.02838854 \
+
   0.14462606   0.64903770  -0.08506848   0.00848055 \
−
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−
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−
   0.97014944   0.06933318   -0.14560628   0.34449643 \
+
   0.41285598   0.19635571   -0.35780432   0.37232067 \
−
   0.77364546  -0.63267645   -0.32425343  -0.41274074 \
+
   0.52690304    0.47304480   -0.31591544    0.50578195 \
−
  -0.09048855   -0.27351375    0.28195963    0.23814589 \
+
  -1.00981526   -0.29888072  -0.38744560  -0.42157147 \
−
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+
   0.00000000    0.00000000    1.40627834   -0.72461044 \
−
   0.46091929   -0.20983287   0.19411799    0.20929951 \
+
   0.09193830   -0.66388086   0.01279809  -0.25416654 \
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−
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−
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−
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   0.33094527   -0.87490899    0.33281045   -0.13360106 \
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−
   0.50990247    0.55352531   -0.21437150   0.11181816 \
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   0.84701140   -0.10671448   0.22188242  -0.25474653 \
−
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−
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   0.39125859   -0.49911648   0.20213892   0.30394795 \
  
 
   }
 
   }

Latest revision as of 21:41, 26 September 2014

# -*- mode: conf -*-

<pre>
# -*- mode: conf -*-
integration {
  subpixel_joint_model {
rotations= \
  0.10380122    0.10291038   -0.19982133   -0.18008646  \
 -0.43791824   -0.58018549   -0.24658316   -0.22181574  \
 -0.34491032   -0.37553759    0.00000000    0.42764855  \
 -0.01491891   -0.00892137   -0.12581056   -0.08425222  \
  0.35278979    0.35644847    0.07284276    0.10641281  \
  0.03768521    0.10429154    0.06654312    0.05320079  \
  0.13813717    0.09751810    0.00000000   -0.13679390  \
  0.04795791    0.11186736   -0.00769637   -0.04521222  \
 -0.00644644   -0.00599834   -0.07619162   -0.07073085  \
 -0.00204618   -0.16888531    0.12977948    0.03760563  \
  0.22991251    0.32668426    0.00000000    0.00000000  \
  0.08698662    0.04886487   -0.14516163   -0.16477543  \
  0.03320451    0.01395237    0.15013794    0.15040198  \
 -0.17016768   -0.32421089   -0.10723501   -0.12773618  \
  0.23372254    0.23125299    0.00000000    0.80630260  \
 -0.20873711   -0.20189223   -0.18032888   -0.18382739  \

translations= \
  0.06711026    0.27009565    0.38742475   -0.06444760  \
 -0.24580026    0.14631291    0.08192622    0.87551925  \
 -1.80719189    0.23306859   -0.30271992    0.21913604  \
 -0.37892096    0.21617004    0.26633915    0.05654973  \
  0.99685077    0.81961866   -0.17024629   -0.56801149  \
  0.00000000    0.00000000   -1.50875590    0.21053766  \
  0.14462606    0.64903770   -0.08506848    0.00848055  \
 -0.60278093    0.28364117   -0.20095729   -0.06499373  \
  0.56940900   -0.05387607   -0.70735671   -0.14731386  \
  0.48035218   -0.35859865    0.24004222   -0.32380489  \
  0.41285598    0.19635571   -0.35780432    0.37232067  \
  0.52690304    0.47304480   -0.31591544    0.50578195  \
 -1.00981526   -0.29888072   -0.38744560   -0.42157147  \
  0.00000000    0.00000000    1.40627834   -0.72461044  \
  0.09193830   -0.66388086    0.01279809   -0.25416654  \
  0.12677401   -0.17249629   -0.02812924   -0.15590271  \
 -0.12587606   -0.06988090    0.27115950    0.07478656  \
 -0.19016218    0.37799502    0.12221204    0.16814886  \
  0.79785135    1.01858169    0.34829586    0.32564817  \
  0.18705826    0.52398034    0.28238449   -0.13261862  \
  0.46791637    1.47446414   -0.04189942    0.28780433  \
  0.00000000    0.00000000    0.00000000    0.00000000  \
 -0.01939991    0.46385595    0.01346956   -0.29223389  \
  0.28748727    0.07587665   -0.46621627   -0.44417058  \
 -0.24083251    0.14664765   -0.13212729    0.01392507  \
 -0.31033297    0.30974769    0.23402865    0.30085627  \
  0.17705869   -1.14688442   -0.38374062   -0.26383869  \
  0.62126288    0.03135912   -0.16355429    0.39773589  \
  0.84701140   -0.10671448    0.22188242   -0.25474653  \
  0.00000000    0.00000000    2.07619843    3.51055784  \
 -0.22976659   -0.49801153   -0.39669519    0.27587572  \
  0.39125859   -0.49911648    0.20213892    0.30394795  \

  }
}

distl {
  detector_tiling = None
  peripheral_margin = 1
  quad_translations =2 -6 4 -6 -6 1 0 -4
  tile_translations = """
       2,  1,  2,  1,  1,  2,  1,  2,
       1,  0,  1,  0,  4,  1,  4,  1,
       2, -2,  2, -2,  0,  0,  0,  0,
       0, -2,  0, -2,  0,  0,  0,  0,

      -1,  0, -1,  0,  0, -1,  0, -1,
      -2,  1, -2,  1, -2,  1, -2,  1,
      -2,  0, -2,  0,  0,  0,  0,  0,
       0,  0,  0,  0, -1,  0, -1,  0,

      -1,  0, -1,  0, -1,  0, -1,  0,
      -1,  0, -1,  0, -1, -1, -1, -1,
      -2,  0, -2,  0,  0,  0,  0,  0,
      -2,  0, -2,  0, -2, -1, -2, -1,

       0, -2,  0, -2,  0, -1,  0, -1,
      -1, -4, -1, -4,  0, -4,  0, -4,
      -1, -3, -1, -3,  0,  0,  0,  0,
      -2, -2, -2, -2,  0, -1,  0, -1"""
} 





# This is from 4ET8.
target_cell = 79 79 38 90 90 90
known_setting = 9

distl_highres_limit = 1.9
force_method2_resolution_limit = 1.9

mosaicity_limit = 1

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

distl {
  res.outer = 1.9
  minimum_signal_height = 5
  minimum_spot_height = 10
  minimum_spot_area = 1
  spot_area_maximum_factor = 20
  compactness_filter = False
  method2_cutoff_percentage = 5

  # Avoids intensity filter.
  peak_intensity_maximum_factor = 10000
}

indexing {
  # Set to True to generate correction vectors.
  verbose_cv = True
}

integration {
  mask_pixel_value=-2
  background_factor = 2
  detector_gain = 1.0

  #model = use_case_3_simulated_annealing_7
  model = user_supplied

  signal_penetration = 0.5
  #spot_shape_verbose = True
  spotfinder_subset = spots_non-ice
  mosaic {
    refinement_target=ML
    kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing
    domain_size_lower_limit=10.
  }

}
Retrieved from "http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=Gd-Lysozyme-t005.phil&oldid=798"