Difference between revisions of "Gd-Lysozyme-t004.phil"
From cctbx_xfel
(Created page with " 2, 1, 2, 1, 1, 2, 1, 2, 1, 0, 1, 0, 3, 1, 3, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -2, 0, 0, 0, 0, -1, 0, -1,...") |
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+ | <pre> | ||
+ | # -*- mode: conf -*- | ||
− | + | distl { | |
− | + | detector_tiling = None | |
− | + | peripheral_margin = 1 | |
− | + | quad_translations =2 -6 4 -6 -6 1 0 -4 | |
+ | tile_translations = """ | ||
+ | 2, 1, 2, 1, 1, 2, 1, 2, | ||
1, 0, 1, 0, 3, 1, 3, 1, | 1, 0, 1, 0, 3, 1, 3, 1, | ||
0, 0, 0, 0, 0, 0, 0, 0, | 0, 0, 0, 0, 0, 0, 0, 0, | ||
Line 21: | Line 25: | ||
-1, -3, -1, -3, 0, -4, 0, -4, | -1, -3, -1, -3, 0, -4, 0, -4, | ||
0, 0, 0, 0, 0, 0, 0, 0, | 0, 0, 0, 0, 0, 0, 0, 0, | ||
− | -2, -2, -2, -2, 0, -1, 0, -1 | + | -2, -2, -2, -2, 0, -1, 0, -1 """ |
+ | } | ||
+ | |||
+ | |||
+ | |||
+ | |||
+ | |||
+ | # This is from 4ET8. | ||
+ | target_cell = 79 79 38 90 90 90 | ||
+ | known_setting = 9 | ||
+ | |||
+ | distl_highres_limit = 1.9 | ||
+ | force_method2_resolution_limit = 1.9 | ||
+ | |||
+ | mosaicity_limit = 1 | ||
+ | |||
+ | # Set to True to pick up second lattice, if present. | ||
+ | #indexing.outlier_detection.switch = True | ||
+ | |||
+ | distl { | ||
+ | res.outer = 1.9 | ||
+ | minimum_signal_height = 5 | ||
+ | minimum_spot_height = 10 | ||
+ | minimum_spot_area = 1 | ||
+ | spot_area_maximum_factor = 20 | ||
+ | compactness_filter = False | ||
+ | method2_cutoff_percentage = 5 | ||
+ | |||
+ | # Avoids intensity filter. | ||
+ | peak_intensity_maximum_factor = 10000 | ||
+ | } | ||
+ | |||
+ | indexing { | ||
+ | # Set to True to generate correction vectors. | ||
+ | verbose_cv = True | ||
+ | } | ||
+ | |||
+ | integration { | ||
+ | mask_pixel_value=-2 | ||
+ | background_factor = 2 | ||
+ | detector_gain = 1.0 | ||
+ | |||
+ | #model = use_case_3_simulated_annealing_7 | ||
+ | model = user_supplied | ||
+ | |||
+ | signal_penetration = 0.5 | ||
+ | #spot_shape_verbose = True | ||
+ | spotfinder_subset = spots_non-ice | ||
+ | mosaic { | ||
+ | refinement_target=ML | ||
+ | kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing | ||
+ | domain_size_lower_limit=10. | ||
+ | } | ||
+ | |||
+ | } | ||
+ | </pre> |
Latest revision as of 01:23, 26 September 2014
# -*- mode: conf -*- distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 tile_translations = """ 2, 1, 2, 1, 1, 2, 1, 2, 1, 0, 1, 0, 3, 1, 3, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -2, 0, 0, 0, 0, -1, 0, -1, 0, 0, -1, 0, -1, -1, 1, -1, 1, -1, 1, -1, 1, -1, 1, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, -1, -1, -1, -2, 0, -2, 0, 0, 0, 0, 0, -2, 1, -2, 1, -1, 0, -1, 0, 0, -2, 0, -2, 0, -1, 0, -1, -1, -3, -1, -3, 0, -4, 0, -4, 0, 0, 0, 0, 0, 0, 0, 0, -2, -2, -2, -2, 0, -1, 0, -1 """ } # This is from 4ET8. target_cell = 79 79 38 90 90 90 known_setting = 9 distl_highres_limit = 1.9 force_method2_resolution_limit = 1.9 mosaicity_limit = 1 # Set to True to pick up second lattice, if present. #indexing.outlier_detection.switch = True distl { res.outer = 1.9 minimum_signal_height = 5 minimum_spot_height = 10 minimum_spot_area = 1 spot_area_maximum_factor = 20 compactness_filter = False method2_cutoff_percentage = 5 # Avoids intensity filter. peak_intensity_maximum_factor = 10000 } indexing { # Set to True to generate correction vectors. verbose_cv = True } integration { mask_pixel_value=-2 background_factor = 2 detector_gain = 1.0 #model = use_case_3_simulated_annealing_7 model = user_supplied signal_penetration = 0.5 #spot_shape_verbose = True spotfinder_subset = spots_non-ice mosaic { refinement_target=ML kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing domain_size_lower_limit=10. } }