http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=Gd-Lysozyme-t003.phil&feed=atom&action=history
Gd-Lysozyme-t003.phil - Revision history
2024-03-28T17:11:46Z
Revision history for this page on the wiki
MediaWiki 1.23.1
http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=Gd-Lysozyme-t003.phil&diff=754&oldid=prev
Tara: Created page with "<pre> # -*- mode: conf -*- distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 tile_translations = """ 0, 0, 0, 0, 0,..."
2014-09-24T18:53:36Z
<p>Created page with "<pre> # -*- mode: conf -*- distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 tile_translations = """ 0, 0, 0, 0, 0,..."</p>
<p><b>New page</b></p><div><pre><br />
# -*- mode: conf -*-<br />
<br />
distl {<br />
detector_tiling = None<br />
peripheral_margin = 1<br />
quad_translations =2 -6 4 -6 -6 1 0 -4<br />
tile_translations = """<br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
<br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0,<br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
<br />
0, 0, 0, 0, 0, 0, 0, 0,<br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0,<br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
<br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0, <br />
0, 0, 0, 0, 0, 0, 0, 0 """<br />
} <br />
<br />
<br />
<br />
<br />
<br />
# This is from 4ET8.<br />
target_cell = 79 79 38 90 90 90<br />
known_setting = 9<br />
<br />
distl_highres_limit = 1.9<br />
force_method2_resolution_limit = 1.9<br />
<br />
mosaicity_limit = 1<br />
<br />
# Set to True to pick up second lattice, if present.<br />
#indexing.outlier_detection.switch = True<br />
<br />
distl {<br />
res.outer = 1.9<br />
minimum_signal_height = 5<br />
minimum_spot_height = 10<br />
minimum_spot_area = 1<br />
spot_area_maximum_factor = 20<br />
compactness_filter = False<br />
method2_cutoff_percentage = 5<br />
<br />
# Avoids intensity filter.<br />
peak_intensity_maximum_factor = 10000<br />
}<br />
<br />
indexing {<br />
# Set to True to generate correction vectors.<br />
verbose_cv = True<br />
}<br />
<br />
integration {<br />
mask_pixel_value=-2<br />
background_factor = 2<br />
detector_gain = 1.0<br />
<br />
#model = use_case_3_simulated_annealing_7<br />
model = user_supplied<br />
<br />
signal_penetration = 0.5<br />
#spot_shape_verbose = True<br />
spotfinder_subset = spots_non-ice<br />
mosaic {<br />
refinement_target=ML<br />
kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing<br />
domain_size_lower_limit=10.<br />
}<br />
<br />
}<br />
</pre></div>
Tara