Difference between revisions of "Gd-Lysozyme-t000.phil"

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(Created page with "<pre> # -*- mode: conf -*- distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 } # This is from ??? target_cell = 79 79 39 90 9...")
 
 
(One intermediate revision by the same user not shown)
Line 6: Line 6:
 
   peripheral_margin = 1
 
   peripheral_margin = 1
 
   quad_translations =2 -6 4 -6 -6 1 0 -4
 
   quad_translations =2 -6 4 -6 -6 1 0 -4
}
+
  tile_translations = """
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
     
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0,
 +
      0, 0,  0, 0,  0, 0,  0, 0  """
 +
}  
  
# This is from ???
 
target_cell = 79 79 39 90 90 90
 
known_setting = 9
 
  
distl_highres_limit = 1.75
+
 
force_method2_resolution_limit = 1.75
+
 
 +
 
 +
# This is from 4ET8.
 +
#target_cell = 79 79 38 90 90 90
 +
#known_setting = 9
 +
 
 +
distl_highres_limit = 1.9
 +
force_method2_resolution_limit = 1.9
  
 
mosaicity_limit = 1
 
mosaicity_limit = 1
Line 21: Line 45:
  
 
distl {
 
distl {
   res.outer = 1.75
+
   res.outer = 1.9
 
   minimum_signal_height = 5
 
   minimum_signal_height = 5
 
   minimum_spot_height = 10
 
   minimum_spot_height = 10

Latest revision as of 23:58, 23 September 2014

# -*- mode: conf -*-

distl {
  detector_tiling = None
  peripheral_margin = 1
  quad_translations =2 -6 4 -6 -6 1 0 -4
  tile_translations = """
       0, 0,  0, 0,  0, 0,  0, 0, 
       0, 0,  0, 0,  0, 0,  0, 0, 
       0, 0,  0, 0,  0, 0,  0, 0, 
       0, 0,  0, 0,  0, 0,  0, 0, 
 
      0, 0,  0, 0,  0, 0,  0, 0, 
      0, 0,  0, 0,  0, 0,  0, 0,
      0, 0,  0, 0,  0, 0,  0, 0, 
      0, 0,  0, 0,  0, 0,  0, 0, 
       
       0, 0,  0, 0,  0, 0,  0, 0,
       0, 0,  0, 0,  0, 0,  0, 0, 
       0, 0,  0, 0,  0, 0,  0, 0,
       0, 0,  0, 0,  0, 0,  0, 0, 
 
       0, 0,  0, 0,  0, 0,  0, 0, 
       0, 0,  0, 0,  0, 0,  0, 0, 
       0, 0,  0, 0,  0, 0,  0, 0, 
      0, 0,  0, 0,  0, 0,  0, 0  """
} 





# This is from 4ET8.
#target_cell = 79 79 38 90 90 90
#known_setting = 9

distl_highres_limit = 1.9
force_method2_resolution_limit = 1.9

mosaicity_limit = 1

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

distl {
  res.outer = 1.9
  minimum_signal_height = 5
  minimum_spot_height = 10
  minimum_spot_area = 1
  spot_area_maximum_factor = 20
  compactness_filter = False
  method2_cutoff_percentage = 5

  # Avoids intensity filter.
  peak_intensity_maximum_factor = 10000
}

indexing {
  # Set to True to generate correction vectors.
  verbose_cv = True
}

integration {
  mask_pixel_value=-2
  background_factor = 2
  detector_gain = 1.0

  #model = use_case_3_simulated_annealing_7
  model = user_supplied

  signal_penetration = 0.5
  #spot_shape_verbose = True
  spotfinder_subset = spots_non-ice
  mosaic {
    refinement_target=ML
    kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing
    domain_size_lower_limit=10.
  }

}