Difference between revisions of "2014 Tutorials"

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(References)
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[http://dx.doi.org/10.1038/nmeth.2887 <i>Nature Methods</i> <b>11</b>, 545-548].
 
[http://dx.doi.org/10.1038/nmeth.2887 <i>Nature Methods</i> <b>11</b>, 545-548].
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008696/pdf/nihms571964.pdf (Reprint)]
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[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008696/pdf/nihms571964.pdf Reprint]
 
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</B>
 
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[http://rstb.royalsocietypublishing.org/content/369/1647/20130590.full.pdf+html <i>Phil. Trans. R. Soc. B</i> <b>369</b>, 20130590].
 
[http://rstb.royalsocietypublishing.org/content/369/1647/20130590.full.pdf+html <i>Phil. Trans. R. Soc. B</i> <b>369</b>, 20130590].
[http://dx.doi.org/10.1098/rstb.2013.0590" Reprint]
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[http://dx.doi.org/10.1098/rstb.2013.0590 Reprint]
 
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<li>
 
<li>
Parkhurst JM, Brewster AS, Fuentes-Montero L, Waterman DG, Hattne J, Ashton, AW, Echols N, Evans G, Sauter NK, Winter
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Parkhurst et al (2014):<B>
G (2014):<B>
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<em>dxtbx</em>: the diffraction experiment toolbox.
 
<em>dxtbx</em>: the diffraction experiment toolbox.
 
</B>
 
</B>
<a href="http://dx.doi.org/10.1107/S1600576714011996">
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[http://dx.doi.org/10.1107/S1600576714011996 <i>J. Appl. Cryst.</i> <b>47</b>, 1459-1465].
<i>J. Appl. Cryst.</i> <b>47</b>, 1459-1465.
+
[http://cci.lbl.gov/publications/download/jo5001_reprint.pdf Reprint]
<a
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href="http://cci.lbl.gov/publications/download/jo5001_reprint.pdf"
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  target=reprints
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>(Reprint)</a>
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</li>
 
</li>
 
<P>
 
  
 
<li>
 
<li>
Kern J, Tran R, Alonso-Mori R, Koroidov S, Echols N, Hattne J, Ibrahim M, Gul S, Laksmono H, Sierra RG, Gildea RJ, Han
+
Kern et al (2014):<B>
G, Hellmich J, Lassalle-Kaiser B,
+
Chatterjee R, Brewster AS, Stan CA, Gl&ouml;ckner C, Lampe A, DiFiore D, Milathianaki D, Fry AR, Seibert MM, Koglin JE
+
, Gallo E, Uhlig J, Sokaras D, Weng T-C,
+
Zwart PH, Skinner DE, Bogan MJ, Messerschmidt M, Glatzel P, Williams GJ, Boutet S, Adams PD, Zouni A, Messinger J, Sau
+
ter NK, Bergmann U, Yano J, Yachandra VK (2014):<B>
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Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
 
Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
 
</B>
 
</B>
<a href="http://dx.doi.org/10.1038/ncomms5371">
+
[http://dx.doi.org/10.1038/ncomms5371 <i>Nature Communications</i> <b>5</b>, 4371].
<i>Nature Communications</i> <b>5</b>, 4371</a>.
+
<a
+
  target=reprints
+
>(Reprint)</a>
+
 
+
<P>
+
 
</li>
 
</li>
  
 
<li>
 
<li>
Sawaya MR, Cascio D, Gingery M, Rodriguez J, Goldschmidt L, Colletier J-P, Messerschmidt MM, Boutet S,
+
Sawaya et al (2014):<B>
Koglin JE, Williams GJ, Brewster AS, Nass K, Hattne J, Botha S, Doak RB, Shoeman RL, DePonte DP,
+
Protein crystal structure obtained at 2.9 A resolution from injecting bacterial cells into an X-ray free-electron
Park H-W, Federici BA, Sauter NK, Schlichting I, Eisenberg DS (2014):<B>
+
Protein crystal structure obtained at 2.9 &Aring resolution from injecting bacterial cells into an X-ray free-electron
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  laser beam.
 
  laser beam.
 
</B>
 
</B>
<a href="http://www.pnas.org/content/early/2014/08/14/1413456111">
+
[http://www.pnas.org/content/early/2014/08/14/1413456111 <i>Proc Natl Acad Sci USA</i><b></b>, epub 18 Aug 2014].
<i>Proc Natl Acad Sci USA</i><b></b>, epub 18 Aug 2014</a>.
+
<a
+
  target=reprints
+
>(Reprint)</a>
+
 
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</li>
 
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Revision as of 20:36, 20 August 2014

Welcome

Four example datasets from the LCLS are described here, with complete instructions for full data processing.

Getting Started

List of Examples

Dataset File Paths Reference & purpose CXIDB
L220 Lysozyme /reg/d/psdm/cxi/cxi84914/xtc/e60 Boutet, 2012 (initial report)
Hattne, 2014 (cctbx reprocessing)
17
Gd-Lysozyme /reg/d/psdm/cxi/cxi84914/xtc/e239
/reg/d/psdm/cxi/cxi84914/xtc/e240
Barends, 2013 (SAD anomalous phasing) 22
L498 Thermolysin /reg/d/psdm/cxi/cxi84914/xtc/e157 Hattne, 2014 (cctbx processing & weak Zn anomalous signal) 23
LB67 Thermolysin /reg/d/psdm/cxi/cxi84914/xtc/e350 unpublished (illustrate CSPAD hi/lo gain settings)

References