Cxi02416-lyso-t002.phil

input {
  address=CxiDs2.0:Cspad.0
}
dispatch.reindex_strong=True
format {
  file_format=cbf
  cbf {
    detz_offset=568
    common_mode.algorithm=custom
    common_mode.custom_parameterization=5,50
  }
}
border_mask {
  border=1
}
spotfinder {
  filter.min_spot_size=2
  threshold.xds.gain=25
  threshold.xds.global_threshold=100
  write_hot_mask=False
}
indexing {
  known_symmetry {
    space_group = P43212
    unit_cell = 78.9 78.9 38.1 90 90 90
  }
  method=real_space_grid_search
  refinement_protocol.n_macro_cycles = 1
  refinement_protocol.d_min_start=1.7
}
integration {
  integrator=stills
  profile.fitting=False
  background {
    algorithm = simple
    simple {
      model.algorithm = linear2d
      outlier.algorithm = mosflm
    }
  }
}
refinement {
  parameterisation {
    beam.fix=all
    detector.fix_list=3, # fix detector rotz, allow distance to refine
    detector.hierarchy_level=0
    auto_reduction {
      action=fix
      min_nref_per_parameter=1
    }
    crystal {
      unit_cell {
	restraints {
	  tie_to_target {
            values=78.9,78.9,38.1,90,90,90
            sigmas=1,1,1,0,0,0
            apply_to_all=True
          }
	}
      }
    }
  }
  reflections {
    outlier.algorithm=null
    weighting_strategy.override=stills
    weighting_strategy.delpsi_constant=1000000
  }
}
profile {
  gaussian_rs {
    min_spots.overall = 0
  }
}