Gd-Lysozyme-t005.phil
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# -*- mode: conf -*- <pre> # -*- mode: conf -*- integration { subpixel_joint_model { rotations= \ 0.09674731 0.07989730 -0.19901338 -0.20726174 \ -0.23830834 -0.54561116 -0.32254118 -0.23491938 \ -0.38213480 -0.40568805 0.00000000 -0.38117534 \ -0.04345543 0.03274763 -0.11864964 -0.09977684 \ 0.36115415 0.37260401 0.05477929 0.11149904 \ -0.01711986 0.04739852 0.09445341 0.03838210 \ 0.32400027 0.13304732 0.00000000 -0.65457856 \ 0.08287607 0.07008890 -0.03954289 -0.03622002 \ -0.00756307 -0.01077960 -0.08730015 -0.08697513 \ 0.02778883 -0.13734546 0.03048996 0.02011849 \ -0.07152487 0.29026432 0.00000000 0.06048312 \ 0.13779893 0.13067054 -0.16007059 -0.18625599 \ 0.03336204 0.00450910 0.15636569 0.14043021 \ -0.25321101 -0.29161931 -0.14166711 -0.11677828 \ 0.17978186 0.25283190 0.00000000 0.16777737 \ -0.18476683 -0.20782213 -0.19189638 -0.17657794 \ translations= \ 0.01645599 0.06357114 0.31182856 -0.18587159 \ -0.33064024 -0.01687369 -0.12924445 0.79448784 \ -1.42820923 0.90388123 -0.19540951 0.30820419 \ -0.45668958 0.83076082 0.20661251 0.13509025 \ 1.11720423 1.63726722 0.24337533 -0.16778626 \ 0.00000000 0.00000000 -1.58479802 2.73609856 \ 0.61802135 0.93311678 0.28939476 0.02838854 \ -0.49137103 0.40110532 -0.27727766 -0.07446340 \ 0.39254526 0.01270432 -0.79533756 -0.06979216 \ 0.36702082 -0.26706710 0.15538574 -0.14033772 \ 0.97014944 0.06933318 -0.14560628 0.34449643 \ 0.77364546 -0.63267645 -0.32425343 -0.41274074 \ -0.09048855 -0.27351375 0.28195963 0.23814589 \ 0.00000000 0.00000000 2.68328835 -1.12698624 \ 0.46091929 -0.20983287 0.19411799 0.20929951 \ 0.22846055 -0.22224587 -0.01548936 -0.07354274 \ -0.07176753 0.12591826 0.36147747 0.16694129 \ -0.10596766 0.50311655 0.30566388 0.26395658 \ 0.75836529 0.29925123 0.22504273 0.13251012 \ 0.33620364 -0.16595709 0.28349104 -0.23108832 \ 0.49086749 0.91005835 -0.07767814 -0.03281312 \ 0.00000000 0.00000000 2.05137291 0.20557855 \ 0.26748940 0.14474252 0.59710369 -0.22904529 \ 0.19027123 -0.05061881 -0.40129730 -0.45381425 \ -0.02407400 0.09955869 -0.01526240 -0.03750652 \ -0.17394381 0.23114235 0.34458238 0.09777947 \ 0.33094527 -0.87490899 0.33281045 -0.13360106 \ 0.04645859 0.07084981 -0.15622817 0.33973182 \ 0.50990247 0.55352531 -0.21437150 0.11181816 \ 0.00000000 0.00000000 0.31198077 3.31932355 \ 0.35255043 -0.93410007 0.41454344 -0.24832485 \ 0.31014590 -0.43458163 0.16026995 0.19435965 \ } } distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 tile_translations = """ 2, 1, 2, 1, 1, 2, 1, 2, 1, 0, 1, 0, 4, 1, 4, 1, 2, -2, 2, -2, 0, 0, 0, 0, 0, -2, 0, -2, 0, 0, 0, 0, -1, 0, -1, 0, 0, -1, 0, -1, -2, 1, -2, 1, -2, 1, -2, 1, -2, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, -1, -1, -1, -2, 0, -2, 0, 0, 0, 0, 0, -2, 0, -2, 0, -2, -1, -2, -1, 0, -2, 0, -2, 0, -1, 0, -1, -1, -4, -1, -4, 0, -4, 0, -4, -1, -3, -1, -3, 0, 0, 0, 0, -2, -2, -2, -2, 0, -1, 0, -1""" } # This is from 4ET8. target_cell = 79 79 38 90 90 90 known_setting = 9 distl_highres_limit = 1.9 force_method2_resolution_limit = 1.9 mosaicity_limit = 1 # Set to True to pick up second lattice, if present. #indexing.outlier_detection.switch = True distl { res.outer = 1.9 minimum_signal_height = 5 minimum_spot_height = 10 minimum_spot_area = 1 spot_area_maximum_factor = 20 compactness_filter = False method2_cutoff_percentage = 5 # Avoids intensity filter. peak_intensity_maximum_factor = 10000 } indexing { # Set to True to generate correction vectors. verbose_cv = True } integration { mask_pixel_value=-2 background_factor = 2 detector_gain = 1.0 #model = use_case_3_simulated_annealing_7 model = user_supplied signal_penetration = 0.5 #spot_shape_verbose = True spotfinder_subset = spots_non-ice mosaic { refinement_target=ML kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing domain_size_lower_limit=10. } }