L498-thermolysin-t001.phil
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# -*- mode: conf -*- #include file /reg/neh/home3/nksauter/myrelease/cxi84914/L498-subpixel.phil distl { detector_tiling = None peripheral_margin = 1 quad_translations = -3 -4 -3 -7 -12 0 -7 -5 tile_translations = """ 1, -1, 1, -1, 0, -1, 0, -1, 0, -2, 0, -2, 2, -1, 2, -1, 1, -3, 1, -3, 0, -3, 0, -3, 0, -4, 0, -4, 0, -2, 0, -2, -1, 1, -1, 1, -1, 1, -1, 1, -2, 2, -2, 2, -2, 2, -2, 2, -2, 2, -2, 2, -1, 2, -1, 2, 0, 2, 0, 2, -1, 1, -1, 1, 1, 2, 1, 2, 0, 2, 0, 2, 1, 2, 1, 2, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, -1, 1, -1, 1, 0, 1, 0, 1, -3, 1, -3, 2, -4, 2, -4, -1, -2, -1, -2, 0, -3, 0, -3, -1, -1, -1, -1, 0, 0, 0, 0 """ } # This is from 2tli. target_cell = 94 94 130 90 90 120 known_setting = 12 distl_highres_limit = 1.8 force_method2_resolution_limit = 1.8 mosaicity_limit = 1 # Set to True to pick up second lattice, if present. #indexing.outlier_detection.switch = True distl { res.outer = 1.8 minimum_signal_height = 5 minimum_spot_height = 10 minimum_spot_area = 1 spot_area_maximum_factor = 20 compactness_filter = False method2_cutoff_percentage = 5 # Avoids intensity filter. peak_intensity_maximum_factor = 10000 } indexing { # Set to True to generate correction vectors. verbose_cv = True } integration { mask_pixel_value=-2 background_factor = 2 detector_gain = 1.0 #model = use_case_3_simulated_annealing_7 model = user_supplied signal_penetration = 0.5 #spot_shape_verbose = True spotfinder_subset = spots_non-ice mosaic { refinement_target=ML kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing domain_size_lower_limit=10. } }