Serial XFEL Crystallography References: Difference between revisions

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Following is a list of references useful for learning about serial XFEL crystallography in general, and ''cctbx.xfel'' in particular.
Following is a list of references useful for learning about serial XFEL crystallography in general, and ''cctbx.xfel'' in particular.


* Uervirojnangkoorn M, ''et. al.'' (2015): [http://elifesciences.org/content/4/e05421 Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals.] ''eLife'' '''4(March)''', e05421.
* Brewster AS ''et al.'' (2025): [https://doi.org/10.1101/2025.05.04.652045 cctbx.xfel: a suite for processing serial crystallographic data.] ''Preprint''.
 
* Mittan-Moreau DW ''et al.'' (2025): [https://doi.org/10.1107/S2059798325002852 Robust error calibration for serial crystallography.] ''Acta Crystallogr D Struct Biol'' '''81''', 265-275.
 
* Blaschke JP ''et al.'' (2024): [https://doi.org/10.3389/fhpcp.2024.1414569 ExaFEL: extreme-scale real-time data processing for X-ray free electron laser science.]  ''Frontiers in High Performance Computing'' '''2'''.
 
* Blaschke JP ''et al.'' (2024): [https://doi.org/10.1002/cpe.8019 Real‐time XFEL data analysis at SLAC and NERSC: A trial run of nascent exascale experimental data analysis.]  ''Concurrency and Computation: Practice and Experience'' '''36'''(12):e8019.
 
* Schriber EA, Paley DW, ''et al.'' (2022): [https://dx.doi.org/10.1038/s41586-021-04218-3 Chemical crystallography by serial femtosecond X-ray diffraction.]  ''Nature'' '''601''', 360-365.
 
* Butryn A ''et al.'' (2021): [https://dx.doi.org/10.1038/s41467-021-24757-7 An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.] ''Nat Commun'' '''12''', 4461.
 
* Brewster AS ''et al.'' (2019): [http://www.phenix-online.org/newsletter Processing serial crystallographic data from XFELs or synchrotrons using the cctbx.xfel GUI.] ''Computational Crystallography Newsletter'' '''10''', 22-39.
 
* Brewster AS, ''et al.'' (2019): [https://doi.org/10.1107/S2059798319012877 SAD phasing of XFEL data depends critically on the error model.] ''Acta Crystallogr D Struct Biol'' '''75''', 959-968.
 
* Brewster AS, ''et al.'' (2018): [https://doi.org/10.1107/S2059798318009191 Improving signal strength in serial crystallography with DIALS geometry refinement].  ''Acta Crystallogr D Struct Biol''  '''74''', 877-894.
 
* Winter G, ''et al.'' (2018): [https://doi.org/10.1107/S2059798317017235 DIALS: implementation and evaluation of a new integration package] ''Acta Crystallogr D Struct Biol'' '''7''4, 85-97.
 
* Uervirojnangkoorn M, ''et al.'' (2015): [http://elifesciences.org/content/4/e05421 Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals.] ''eLife'' '''4''', e05421.


* Sauter NK, Hattne J, Brewster AS, Echols N, Zwart PH, Adams PD (2014): [http://dx.doi.org/10.1107/S1399004714024134 Improved crystal orientation and physical properties from single-shot XFEL stills.] ''Acta Crystallographica Section D: Biological. Crystallography D'' '''70''', 3299-309. [PMID:25478847] [PMC reprint: [http://ncbi.nlm.nih.gov/pmc/articles/PMC4257623/ PMC4257623] [http://cci.lbl.gov/publications/download/Mosaicity_wa5077.pdf (Reprint)]
* Sauter NK, Hattne J, Brewster AS, Echols N, Zwart PH, Adams PD (2014): [http://dx.doi.org/10.1107/S1399004714024134 Improved crystal orientation and physical properties from single-shot XFEL stills.] ''Acta Crystallographica Section D: Biological. Crystallography D'' '''70''', 3299-309. [PMID:25478847] [PMC reprint: [http://ncbi.nlm.nih.gov/pmc/articles/PMC4257623/ PMC4257623] [http://cci.lbl.gov/publications/download/Mosaicity_wa5077.pdf (Reprint)]


* Sauter NK, ''et. al.'' (2013): [http://dx.doi.org/10.1107/S0907444913000863 New Python-based methods for data processing.] ''Acta Crystallographica Section D: Biological Crystallography D'' '''69''', 1274-1282. [http://cci.lbl.gov/publications/download/ba5193_reprint.pdf (Reprint)]
* Sauter NK, ''et al.'' (2013): [http://dx.doi.org/10.1107/S0907444913000863 New Python-based methods for data processing.] ''Acta Crystallographica Section D: Biological Crystallography D'' '''69''', 1274-1282. [http://cci.lbl.gov/publications/download/ba5193_reprint.pdf (Reprint)]


* Kern J, ''et. al.'' (2013): [http://www.sciencemag.org/content/early/2013/02/13/science.1234273 Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature.] ''Science'' '''340''', 491-495.
* Kern J, ''et al.'' (2013): [http://www.sciencemag.org/content/early/2013/02/13/science.1234273 Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature.] ''Science'' '''340''', 491-495.


* Kern J, ''et. al.'' (2012): [http://www.pnas.org/content/early/2012/05/31/1204598109.abstract Room temperature femtosecond X-ray diffraction of photosytem II microcrystals]. ''Proc. Natl. Acad. Sci.'' USA '''109''', 9721-9726. [http://cci.lbl.gov/publications/download/PNAS-2012-Kern-9721-6.pdf (Reprint)]
* Kern J, ''et. al.'' (2012): [http://www.pnas.org/content/early/2012/05/31/1204598109.abstract Room temperature femtosecond X-ray diffraction of photosytem II microcrystals]. ''Proc. Natl. Acad. Sci.'' USA '''109''', 9721-9726. [http://cci.lbl.gov/publications/download/PNAS-2012-Kern-9721-6.pdf (Reprint)]


* Sierra RG ''et. al.'' (2012): [http://dx.doi.org/10.1107/S0907444912038152 Nanoflow electrospinning serial femtosecond crystallography]. ''Acta Cryst. D'' '''68''', 1584-1587. [http://cci.lbl.gov/publications/download/lv5021.pdf (Reprint)]
* Sierra RG ''et al.'' (2012): [http://dx.doi.org/10.1107/S0907444912038152 Nanoflow electrospinning serial femtosecond crystallography]. ''Acta Cryst. D'' '''68''', 1584-1587. [http://cci.lbl.gov/publications/download/lv5021.pdf (Reprint)]


* Alonso-Mori R, ''et. al.'' (2012): [http://dx.doi.org/10.1073/pnas.1211384109Energy-dispersive X-ray emission spectroscopy using an X-ray free electron laser in a shot-by-shot mode]. ''Proc. Natl. Acad. Sci.'' USA '''109''', 19103-19107. [http://cci.lbl.gov/publications/download/PNAS-2012-Alonso-Mori-19103-7.pdf (Reprint)]
* Alonso-Mori R, ''et al.'' (2012): [http://dx.doi.org/10.1073/pnas.1211384109Energy-dispersive X-ray emission spectroscopy using an X-ray free electron laser in a shot-by-shot mode]. ''Proc. Natl. Acad. Sci.'' USA '''109''', 19103-19107. [http://cci.lbl.gov/publications/download/PNAS-2012-Alonso-Mori-19103-7.pdf (Reprint)]


* H. N. Chapmanet ''et. al.'' (2011): [http://www.ncbi.nlm.nih.gov/pubmed/21293373 Femtosecond x-ray protein nanocrystallography]. ''Nature'' '''470''', 73.
* H. N. Chapman ''et al.'' (2011): [http://www.ncbi.nlm.nih.gov/pubmed/21293373 Femtosecond x-ray protein nanocrystallography]. ''Nature'' '''470''', 73.

Latest revision as of 20:51, 15 July 2026

Following is a list of references useful for learning about serial XFEL crystallography in general, and cctbx.xfel in particular.

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