Ha14 Tutorials: Difference between revisions
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THIS PAGE IS DEPRECATED. This page details processing procedures described in [https://doi.org/10.1038/nmeth.2887 Hattne 2014] (Ha14), using LABELIT for initial indexing and stills-specific refinement and integration code implemented in the package ''cctbx.rstbx'' | |||
Processing xfel data at LCLS consists of four steps: | |||
* Averaging and other [[Preparatory steps]] | * Averaging and other [[Preparatory steps]] | ||
Revision as of 22:34, 6 November 2018
THIS PAGE IS DEPRECATED. This page details processing procedures described in Hattne 2014 (Ha14), using LABELIT for initial indexing and stills-specific refinement and integration code implemented in the package cctbx.rstbx
Processing xfel data at LCLS consists of four steps:
- Averaging and other Preparatory steps
- Metrology refinement
- Indexing and integration. Optional steps:
- Real-time progress monitoring.
- Streaming data viewer.
- Configuring specific spotfinder, indexing and integration parameters using phil.
- Merging
- Advanced Merging: Use cases for isomorphous replacement and de novo structure
- cctbx.prime: Merging using the prime.postrefine program.
- Resolving an Indexing Ambiguity
Additionally, cctbx.xfel utilizes phil files to manage its configuration settings.
Processing L498 thermolysin details instructions to reproduce the results published in the forthcoming cctbx.xfel paper.