Configure cctbx.xfel from existing Phenix install: Difference between revisions
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(Created page with "Much of the code to run ''cctbx.xfel'' is already bundled in the latest phenix installers. The only missing package is DIALS. Here's how to get ''cctbx.xfel'' configured fro...") |
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Note: this only applies to processing individual stills. Functionality to read XTC streams from LCLS is not included when using this procedure. | Note: this only applies to processing individual stills. Functionality to read XTC streams from LCLS is not included when using this procedure. | ||
Once Phenix is installed: | Once Phenix is installed and sourced correctly: | ||
cd <path to phenix installation>/modules | cd <path to phenix installation>/modules | ||
| Line 11: | Line 11: | ||
make | make | ||
make | make | ||
prime.postrefine, one of the merging and scaling programs provided with ''cctbx.xfel'' requires scipy. This can be installed with this command: | |||
libtbx.python -m easy_install scipy | |||
On linux, this may require openssl to be installed, if it's not already: | |||
yum install openssl098e | |||
Revision as of 20:33, 11 August 2015
Much of the code to run cctbx.xfel is already bundled in the latest phenix installers. The only missing package is DIALS. Here's how to get cctbx.xfel configured from an existing Phenix installation.
Note: this only applies to processing individual stills. Functionality to read XTC streams from LCLS is not included when using this procedure.
Once Phenix is installed and sourced correctly:
cd <path to phenix installation>/modules svn co https://svn.code.sf.net/p/dials/code/trunk dials cd ../modules/build libtbx.configure xfel make make
prime.postrefine, one of the merging and scaling programs provided with cctbx.xfel requires scipy. This can be installed with this command:
libtbx.python -m easy_install scipy
On linux, this may require openssl to be installed, if it's not already:
yum install openssl098e