Gd-Lysozyme-t005.phil: Difference between revisions
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integration { | integration { | ||
subpixel_joint_model { | subpixel_joint_model { | ||
rotations= \ | |||
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-0. | -0.43791824 -0.58018549 -0.24658316 -0.22181574 \ | ||
-0. | -0.34491032 -0.37553759 0.00000000 0.42764855 \ | ||
-0. | -0.01491891 -0.00892137 -0.12581056 -0.08425222 \ | ||
0. | 0.35278979 0.35644847 0.07284276 0.10641281 \ | ||
0.03768521 0.10429154 0.06654312 0.05320079 \ | |||
0. | 0.13813717 0.09751810 0.00000000 -0.13679390 \ | ||
0. | 0.04795791 0.11186736 -0.00769637 -0.04521222 \ | ||
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-0.00204618 -0.16888531 0.12977948 0.03760563 \ | |||
0.22991251 0.32668426 0.00000000 0.00000000 \ | |||
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0. | 0.23372254 0.23125299 0.00000000 0.80630260 \ | ||
-0. | -0.20873711 -0.20189223 -0.18032888 -0.18382739 \ | ||
translations= \ | translations= \ | ||
0. | 0.06711026 0.27009565 0.38742475 -0.06444760 \ | ||
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-1. | -1.80719189 0.23306859 -0.30271992 0.21913604 \ | ||
-0. | -0.37892096 0.21617004 0.26633915 0.05654973 \ | ||
0.99685077 0.81961866 -0.17024629 -0.56801149 \ | |||
0.00000000 0.00000000 -1. | 0.00000000 0.00000000 -1.50875590 0.21053766 \ | ||
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0.00000000 0.00000000 | 0.00000000 0.00000000 1.40627834 -0.72461044 \ | ||
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0. | 0.46791637 1.47446414 -0.04189942 0.28780433 \ | ||
0.00000000 0.00000000 | 0.00000000 0.00000000 0.00000000 0.00000000 \ | ||
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0. | 0.17705869 -1.14688442 -0.38374062 -0.26383869 \ | ||
0. | 0.62126288 0.03135912 -0.16355429 0.39773589 \ | ||
0. | 0.84701140 -0.10671448 0.22188242 -0.25474653 \ | ||
0.00000000 0.00000000 | 0.00000000 0.00000000 2.07619843 3.51055784 \ | ||
0. | -0.22976659 -0.49801153 -0.39669519 0.27587572 \ | ||
0. | 0.39125859 -0.49911648 0.20213892 0.30394795 \ | ||
} | } |
Latest revision as of 21:41, 26 September 2014
# -*- mode: conf -*- <pre> # -*- mode: conf -*- integration { subpixel_joint_model { rotations= \ 0.10380122 0.10291038 -0.19982133 -0.18008646 \ -0.43791824 -0.58018549 -0.24658316 -0.22181574 \ -0.34491032 -0.37553759 0.00000000 0.42764855 \ -0.01491891 -0.00892137 -0.12581056 -0.08425222 \ 0.35278979 0.35644847 0.07284276 0.10641281 \ 0.03768521 0.10429154 0.06654312 0.05320079 \ 0.13813717 0.09751810 0.00000000 -0.13679390 \ 0.04795791 0.11186736 -0.00769637 -0.04521222 \ -0.00644644 -0.00599834 -0.07619162 -0.07073085 \ -0.00204618 -0.16888531 0.12977948 0.03760563 \ 0.22991251 0.32668426 0.00000000 0.00000000 \ 0.08698662 0.04886487 -0.14516163 -0.16477543 \ 0.03320451 0.01395237 0.15013794 0.15040198 \ -0.17016768 -0.32421089 -0.10723501 -0.12773618 \ 0.23372254 0.23125299 0.00000000 0.80630260 \ -0.20873711 -0.20189223 -0.18032888 -0.18382739 \ translations= \ 0.06711026 0.27009565 0.38742475 -0.06444760 \ -0.24580026 0.14631291 0.08192622 0.87551925 \ -1.80719189 0.23306859 -0.30271992 0.21913604 \ -0.37892096 0.21617004 0.26633915 0.05654973 \ 0.99685077 0.81961866 -0.17024629 -0.56801149 \ 0.00000000 0.00000000 -1.50875590 0.21053766 \ 0.14462606 0.64903770 -0.08506848 0.00848055 \ -0.60278093 0.28364117 -0.20095729 -0.06499373 \ 0.56940900 -0.05387607 -0.70735671 -0.14731386 \ 0.48035218 -0.35859865 0.24004222 -0.32380489 \ 0.41285598 0.19635571 -0.35780432 0.37232067 \ 0.52690304 0.47304480 -0.31591544 0.50578195 \ -1.00981526 -0.29888072 -0.38744560 -0.42157147 \ 0.00000000 0.00000000 1.40627834 -0.72461044 \ 0.09193830 -0.66388086 0.01279809 -0.25416654 \ 0.12677401 -0.17249629 -0.02812924 -0.15590271 \ -0.12587606 -0.06988090 0.27115950 0.07478656 \ -0.19016218 0.37799502 0.12221204 0.16814886 \ 0.79785135 1.01858169 0.34829586 0.32564817 \ 0.18705826 0.52398034 0.28238449 -0.13261862 \ 0.46791637 1.47446414 -0.04189942 0.28780433 \ 0.00000000 0.00000000 0.00000000 0.00000000 \ -0.01939991 0.46385595 0.01346956 -0.29223389 \ 0.28748727 0.07587665 -0.46621627 -0.44417058 \ -0.24083251 0.14664765 -0.13212729 0.01392507 \ -0.31033297 0.30974769 0.23402865 0.30085627 \ 0.17705869 -1.14688442 -0.38374062 -0.26383869 \ 0.62126288 0.03135912 -0.16355429 0.39773589 \ 0.84701140 -0.10671448 0.22188242 -0.25474653 \ 0.00000000 0.00000000 2.07619843 3.51055784 \ -0.22976659 -0.49801153 -0.39669519 0.27587572 \ 0.39125859 -0.49911648 0.20213892 0.30394795 \ } } distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 tile_translations = """ 2, 1, 2, 1, 1, 2, 1, 2, 1, 0, 1, 0, 4, 1, 4, 1, 2, -2, 2, -2, 0, 0, 0, 0, 0, -2, 0, -2, 0, 0, 0, 0, -1, 0, -1, 0, 0, -1, 0, -1, -2, 1, -2, 1, -2, 1, -2, 1, -2, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, 0, -1, -1, -1, -1, -2, 0, -2, 0, 0, 0, 0, 0, -2, 0, -2, 0, -2, -1, -2, -1, 0, -2, 0, -2, 0, -1, 0, -1, -1, -4, -1, -4, 0, -4, 0, -4, -1, -3, -1, -3, 0, 0, 0, 0, -2, -2, -2, -2, 0, -1, 0, -1""" } # This is from 4ET8. target_cell = 79 79 38 90 90 90 known_setting = 9 distl_highres_limit = 1.9 force_method2_resolution_limit = 1.9 mosaicity_limit = 1 # Set to True to pick up second lattice, if present. #indexing.outlier_detection.switch = True distl { res.outer = 1.9 minimum_signal_height = 5 minimum_spot_height = 10 minimum_spot_area = 1 spot_area_maximum_factor = 20 compactness_filter = False method2_cutoff_percentage = 5 # Avoids intensity filter. peak_intensity_maximum_factor = 10000 } indexing { # Set to True to generate correction vectors. verbose_cv = True } integration { mask_pixel_value=-2 background_factor = 2 detector_gain = 1.0 #model = use_case_3_simulated_annealing_7 model = user_supplied signal_penetration = 0.5 #spot_shape_verbose = True spotfinder_subset = spots_non-ice mosaic { refinement_target=ML kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing domain_size_lower_limit=10. } }