Gd-Lysozyme-3-t003.phil

# -*- mode: conf -*-
integration {
  subpixel_joint_model {
rotations= \
  0.09795939    0.08349210   -0.20361419   -0.20691617  \
 -0.39923060   -0.54209480   -0.43653566   -0.23003526  \
 -0.10242422   -0.40710596    0.00000000   -0.55354323  \
 -0.00227234    0.00971335   -0.10693288   -0.09601335  \
  0.35732751    0.37366355    0.04993701    0.10813432  \
  0.09209811    0.08719825    0.07085397    0.04337531  \
  0.27509365    0.10691720    0.00000000    1.26418314  \
  0.08784942    0.07443324   -0.01190203   -0.04532097  \
 -0.00512166   -0.01107914   -0.08955462   -0.08896718  \
  0.00377937   -0.14850067   -0.15819279    0.01605924  \
  0.10442629    0.30097014    0.00000000    0.00000000  \
  0.14725246    0.12086300   -0.17581044   -0.18857045  \
  0.03577268    0.00540184    0.15932964    0.13831522  \
 -0.34188415   -0.30083027   -0.11606445   -0.11739372  \
 -0.04008142    0.39361071    0.00000000    0.07115385  \
 -0.08882254   -0.22357834   -0.17866009   -0.17357300

translations= \
  0.01138666    0.08908748    0.30685503   -0.16366058  \
 -0.34040280    0.00489799   -0.13356964    0.82695198  \
 -1.63444789    1.00840212   -0.18990078    0.35456751  \
 -0.56781276    0.69371881    0.17613032    0.17960829  \
  1.43806650    1.49706731    0.24298697   -0.11418696  \
  0.00000000    0.00000000   -1.61039353    2.71622499  \
  0.49659655    0.84873056    0.23416644    0.06339607  \
 -0.49159691    0.42130810   -0.28579630   -0.04771136  \
  0.40396799    0.03458436   -0.78921824   -0.05107363  \
  0.37149539   -0.24059200    0.18485137   -0.11352443  \
  0.78171995    0.12776378   -0.19006243    0.35734808  \
  0.91958122   -0.61123520   -0.35530928   -0.39124163  \
  0.11105022   -0.07804747    0.24755727    0.30765233  \
  0.00000000    0.00000000    0.50147000   -2.98063598  \
  0.45326580   -0.13011659    0.19856685    0.29404793  \
  0.25159805   -0.18185393    0.06139230   -0.03307170  \
 -0.06014947    0.15876686    0.36331151    0.19659868  \
 -0.09406686    0.52517409    0.32067849    0.27958553  \
  0.81495141    0.23428511    0.27855604    0.12625253  \
  0.56380094   -0.08960831    0.30332662   -0.19785159  \
  0.10492892    0.69801869   -0.11844839   -0.10765278  \
  0.00000000    0.00000000    0.00000000    0.00000000  \
 -0.65023906    0.12419634   -0.30540996   -0.27406762  \
  0.22837869   -0.05066519   -0.40744436   -0.44822474  \
 -0.01954448    0.11462679   -0.02019565   -0.02985755  \
 -0.17024019    0.24236576    0.34553328    0.11662655  \
  0.18911301   -0.95155061    0.34060711   -0.11830191  \
  0.03180065    0.06591146   -0.17540330    0.33672156  \
  0.32635750    0.54275894   -0.16189418    0.18520007  \
  0.00000000    0.00000000    0.16967828    3.10354466  \
  0.42318831   -0.84074715    0.43334905   -0.24389003  \
  0.31224335   -0.41763206    0.16475690    0.22534555

  }
}

distl{
  detector_tiling = None
  peripheral_margin = 1
  quad_translations =2 -6 4 -6 -6 1 0 -4
  tile_translations = """
       2,  1,  2,  1,  1,  2,  1,  2,
       1,  0,  1,  0,  4,  1,  4,  1,
       2, -2,  2, -2,  0,  0,  0,  0,
       0, -2,  0, -2,  0,  0,  0,  0,

      -1,  0, -1,  0,  0, -1,  0, -1,
      -2,  1, -2,  1, -2,  0, -2,  0,
      -2,  1, -2,  1,  0,  0,  0,  0,
       0,  1,  0,  1, -1,  0, -1,  0,

      -1,  0, -1,  0, -1,  0, -1,  0,
      -1,  0, -1,  0, -1, -1, -1, -1,
      -2,  0, -2,  0,  0,  0,  0,  0,
      -2,  0, -2,  0, -2, -1, -2, -1,

       0, -2,  0, -2,  0, -1,  0, -1,
       0, -4,  0, -4,  0, -4,  0, -4,
      -1, -3, -1, -3,  0,  0,  0,  0,
      -1, -3, -1, -3,  0, -1,  0, -1"""
}





# This is from 4ET8.
target_cell = 79 79 38 90 90 90
known_setting = 9

distl_highres_limit = 1.9
force_method2_resolution_limit = 1.9

mosaicity_limit = 1

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

distl {
  res.outer = 1.9
  minimum_signal_height = 5
  minimum_spot_height = 10
  minimum_spot_area = 1
  spot_area_maximum_factor = 20
  compactness_filter = False
  method2_cutoff_percentage = 5

  # Avoids intensity filter.
  peak_intensity_maximum_factor = 10000
}

indexing {
  # Set to True to generate correction vectors.
  verbose_cv = True
}

integration {
  mask_pixel_value=-2
  background_factor = 2
  detector_gain = 1.0

  #model = use_case_3_simulated_annealing_7
  model = user_supplied

  signal_penetration = 0.5
  #spot_shape_verbose = True
  spotfinder_subset = spots_non-ice
  mosaic {
    refinement_target=ML
    kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing
    domain_size_lower_limit=10.
  }

}