Gd-Lysozyme-t005.phil

# -*- mode: conf -*-

<pre>
# -*- mode: conf -*-
integration {
  subpixel_joint_model {
rotations= \
  0.10380122    0.10291038   -0.19982133   -0.18008646  \
 -0.43791824   -0.58018549   -0.24658316   -0.22181574  \
 -0.34491032   -0.37553759    0.00000000    0.42764855  \
 -0.01491891   -0.00892137   -0.12581056   -0.08425222  \
  0.35278979    0.35644847    0.07284276    0.10641281  \
  0.03768521    0.10429154    0.06654312    0.05320079  \
  0.13813717    0.09751810    0.00000000   -0.13679390  \
  0.04795791    0.11186736   -0.00769637   -0.04521222  \
 -0.00644644   -0.00599834   -0.07619162   -0.07073085  \
 -0.00204618   -0.16888531    0.12977948    0.03760563  \
  0.22991251    0.32668426    0.00000000    0.00000000  \
  0.08698662    0.04886487   -0.14516163   -0.16477543  \
  0.03320451    0.01395237    0.15013794    0.15040198  \
 -0.17016768   -0.32421089   -0.10723501   -0.12773618  \
  0.23372254    0.23125299    0.00000000    0.80630260  \
 -0.20873711   -0.20189223   -0.18032888   -0.18382739  \

translations= \
  0.06711026    0.27009565    0.38742475   -0.06444760  \
 -0.24580026    0.14631291    0.08192622    0.87551925  \
 -1.80719189    0.23306859   -0.30271992    0.21913604  \
 -0.37892096    0.21617004    0.26633915    0.05654973  \
  0.99685077    0.81961866   -0.17024629   -0.56801149  \
  0.00000000    0.00000000   -1.50875590    0.21053766  \
  0.14462606    0.64903770   -0.08506848    0.00848055  \
 -0.60278093    0.28364117   -0.20095729   -0.06499373  \
  0.56940900   -0.05387607   -0.70735671   -0.14731386  \
  0.48035218   -0.35859865    0.24004222   -0.32380489  \
  0.41285598    0.19635571   -0.35780432    0.37232067  \
  0.52690304    0.47304480   -0.31591544    0.50578195  \
 -1.00981526   -0.29888072   -0.38744560   -0.42157147  \
  0.00000000    0.00000000    1.40627834   -0.72461044  \
  0.09193830   -0.66388086    0.01279809   -0.25416654  \
  0.12677401   -0.17249629   -0.02812924   -0.15590271  \
 -0.12587606   -0.06988090    0.27115950    0.07478656  \
 -0.19016218    0.37799502    0.12221204    0.16814886  \
  0.79785135    1.01858169    0.34829586    0.32564817  \
  0.18705826    0.52398034    0.28238449   -0.13261862  \
  0.46791637    1.47446414   -0.04189942    0.28780433  \
  0.00000000    0.00000000    0.00000000    0.00000000  \
 -0.01939991    0.46385595    0.01346956   -0.29223389  \
  0.28748727    0.07587665   -0.46621627   -0.44417058  \
 -0.24083251    0.14664765   -0.13212729    0.01392507  \
 -0.31033297    0.30974769    0.23402865    0.30085627  \
  0.17705869   -1.14688442   -0.38374062   -0.26383869  \
  0.62126288    0.03135912   -0.16355429    0.39773589  \
  0.84701140   -0.10671448    0.22188242   -0.25474653  \
  0.00000000    0.00000000    2.07619843    3.51055784  \
 -0.22976659   -0.49801153   -0.39669519    0.27587572  \
  0.39125859   -0.49911648    0.20213892    0.30394795  \

  }
}

distl {
  detector_tiling = None
  peripheral_margin = 1
  quad_translations =2 -6 4 -6 -6 1 0 -4
  tile_translations = """
       2,  1,  2,  1,  1,  2,  1,  2,
       1,  0,  1,  0,  4,  1,  4,  1,
       2, -2,  2, -2,  0,  0,  0,  0,
       0, -2,  0, -2,  0,  0,  0,  0,

      -1,  0, -1,  0,  0, -1,  0, -1,
      -2,  1, -2,  1, -2,  1, -2,  1,
      -2,  0, -2,  0,  0,  0,  0,  0,
       0,  0,  0,  0, -1,  0, -1,  0,

      -1,  0, -1,  0, -1,  0, -1,  0,
      -1,  0, -1,  0, -1, -1, -1, -1,
      -2,  0, -2,  0,  0,  0,  0,  0,
      -2,  0, -2,  0, -2, -1, -2, -1,

       0, -2,  0, -2,  0, -1,  0, -1,
      -1, -4, -1, -4,  0, -4,  0, -4,
      -1, -3, -1, -3,  0,  0,  0,  0,
      -2, -2, -2, -2,  0, -1,  0, -1"""
} 





# This is from 4ET8.
target_cell = 79 79 38 90 90 90
known_setting = 9

distl_highres_limit = 1.9
force_method2_resolution_limit = 1.9

mosaicity_limit = 1

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

distl {
  res.outer = 1.9
  minimum_signal_height = 5
  minimum_spot_height = 10
  minimum_spot_area = 1
  spot_area_maximum_factor = 20
  compactness_filter = False
  method2_cutoff_percentage = 5

  # Avoids intensity filter.
  peak_intensity_maximum_factor = 10000
}

indexing {
  # Set to True to generate correction vectors.
  verbose_cv = True
}

integration {
  mask_pixel_value=-2
  background_factor = 2
  detector_gain = 1.0

  #model = use_case_3_simulated_annealing_7
  model = user_supplied

  signal_penetration = 0.5
  #spot_shape_verbose = True
  spotfinder_subset = spots_non-ice
  mosaic {
    refinement_target=ML
    kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing
    domain_size_lower_limit=10.
  }

}