Data Processing at SACLA: Difference between revisions
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== | == Obtaining metadata like detector position == | ||
1) AgBeh (silver behenate). Determine detector distance and beam center | 1) AgBeh (silver behenate). Determine detector distance and beam center | ||
--> update SACLA-provided *.geom file (CrystFEL format) | --> update SACLA-provided *.geom file (CrystFEL format) | ||
--> run sacla geom to json on *.geom to get equivalent for DIALS processing | --> run sacla geom to json on *.geom to get equivalent for DIALS processing | ||
== DIALS workflow == | == DIALS workflow == | ||
Revision as of 22:18, 17 November 2017
Obtaining metadata like detector position
1) AgBeh (silver behenate). Determine detector distance and beam center --> update SACLA-provided *.geom file (CrystFEL format) --> run sacla geom to json on *.geom to get equivalent for DIALS processing
DIALS workflow
dials.import file.h5 (the h5 will have 1000's of images in it) --> datablock.json. Has experimental models as abstracted from image header
dials.find_spots datablock.json --> strong.pickle
dials.index strong.pickle datablock.json --> indexed.pickle experiments.json
Aggregate processing at XFELS
dials.stills_process (substitutes for the individual steps)