http://viper.lbl.gov:8080/cctbx.xfel/index.php?action=history&feed=atom&title=Stills_target.phil 2026-06-24T08:05:51Z Revision history for this page on the wiki MediaWiki 1.39.15 http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=Stills_target.phil&diff=968&oldid=prev 2015-08-11T17:26:04Z

<p>Created page with &quot;&lt;pre&gt; # -*- mode: conf -*- distl_highres_limit = 3 force_method2_resolution_limit = 3 beam_search_scope = 0.5 difflimit_sigma_cutoff = 2 distl_minimum_number_spots_for_inde...&quot;</p> <p><b>New page</b></p><div>&lt;pre&gt;<br /> <br /> # -*- mode: conf -*-<br /> <br /> distl_highres_limit = 3<br /> force_method2_resolution_limit = 3<br /> <br /> beam_search_scope = 0.5<br /> difflimit_sigma_cutoff = 2<br /> distl_minimum_number_spots_for_indexing = 30<br /> lepage_max_delta = 3<br /> model_refinement_minimum_N = 20<br /> mosaicity_limit = 0.5<br /> mosflm_rmsd_tolerance = 5<br /> rmsd_tolerance = 5<br /> distl_permit_binning=False<br /> <br /> # Set to True to pick up second lattice, if present.<br /> #indexing.outlier_detection.switch = True<br /> <br /> # Suppress intermediate output files.<br /> refinements_pickle = None<br /> spots_pickle = None<br /> subgroups_pickle = None<br /> <br /> distl {<br /> bins.verbose = True<br /> res.outer = 3<br /> <br /> minimum_signal_height = 5<br /> minimum_spot_area = 2<br /> minimum_spot_height = 5<br /> spot_area_maximum_factor = 200<br /> compactness_filter = False<br /> method2_cutoff_percentage = 5<br /> <br /> # Avoids intensity filter.<br /> peak_intensity_maximum_factor = 10000<br /> }<br /> <br /> indexing {<br /> # Set to True to generate correction vectors.<br /> verbose_cv = True<br /> }<br /> <br /> integration {<br /> background_factor = 2<br /> detector_gain = 1<br /> <br /> model = user_supplied<br /> guard_width_sq=4<br /> spotfinder_subset=spots_non-ice<br /> greedy_integration_limit=True<br /> combine_sym_constraints_and_3D_target=True<br /> #enable_residual_map=True<br /> #enable_residual_scatter=True<br /> spot_prediction=dials<br /> # DECTRIS parallax<br /> signal_penetration = 0.5<br /> mosaic {<br /> refinement_target=ML<br /> kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing rate<br /> <br /> domain_size_lower_limit=4<br /> enable_rotational_target_highsym=False<br /> # plot delta psi vs. 2theta<br /> #enable_AD14F7B=True<br /> #enable_simplex=True<br /> }<br /> #montecarlo_integration_limit=2.5<br /> }</div>

Aaron