http://viper.lbl.gov:8080/cctbx.xfel/index.php?action=history&feed=atom&title=L498-thermolysin-t003.phil 2026-06-24T09:41:02Z Revision history for this page on the wiki MediaWiki 1.39.15 http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=L498-thermolysin-t003.phil&diff=562&oldid=prev 2014-08-22T05:55:46Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:55, 22 August 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l117">Line 117:</td> <td colspan="2" class="diff-lineno">Line 117:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>integration {</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>integration {</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">  mask_pixel_value=-2</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   background_factor = 2</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   background_factor = 2</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   detector_gain = 1.0</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   detector_gain = 1.0</div></td></tr> </table>

Nicksauter http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=L498-thermolysin-t003.phil&diff=558&oldid=prev 2014-08-22T05:43:19Z

<p>Created page with &quot;&lt;pre&gt; # -*- mode: conf -*- integration { subpixel_joint_model { rotations = \ 0.08784824 0.07586608 -0.24056670 -0.23488591 \ -0.53587811 -0.55767840 -0.2...&quot;</p> <p><b>New page</b></p><div>&lt;pre&gt;<br /> # -*- mode: conf -*-<br /> integration {<br /> subpixel_joint_model {<br /> rotations = \<br /> 0.08784824 0.07586608 -0.24056670 -0.23488591 \<br /> -0.53587811 -0.55767840 -0.25677729 -0.24162305 \<br /> -0.37063755 -0.36431530 -0.29087754 -0.31436191 \<br /> -0.01775368 -0.02332200 -0.14625939 -0.13630001 \<br /> 0.26616030 0.29616388 0.01961986 0.03906939 \<br /> 0.02793548 0.01480748 0.01968022 -0.00306063 \<br /> 0.05039526 0.07277043 0.04020708 0.07712253 \<br /> -0.01278467 -0.02418700 -0.10259034 -0.10837917 \<br /> -0.04222492 -0.04034484 -0.10547741 -0.11489878 \<br /> -0.12340217 -0.19245917 0.01620170 -0.00253942 \<br /> 0.25375480 0.28962958 0.26243937 0.22570546 \<br /> -0.02360681 -0.02957240 -0.17570939 -0.18964705 \<br /> 0.01290267 -0.00844394 0.11980236 0.12496882 \<br /> -0.97016502 -0.28981630 0.00000000 -0.13213586 \<br /> 0.25761239 0.29702982 0.10687828 0.15664466 \<br /> -0.18968090 -0.18555784 -0.20854561 -0.19813884<br /> <br /> translations = \<br /> -0.01091411 0.60624397 0.17518429 0.32015022 \<br /> -0.16824827 -0.21034649 -0.01244696 0.61768866 \<br /> -1.48052081 0.66486853 0.36093062 0.40798858 \<br /> -0.65611847 0.39214211 0.10012695 0.34319722 \<br /> -0.16562004 1.23445183 -0.55706418 -0.13895835 \<br /> -0.04146741 0.84448578 -0.39725537 -0.15673608 \<br /> 0.25159917 0.12582723 0.34053543 -0.06731553 \<br /> 0.01781230 -0.10935269 0.50346370 -0.22981912 \<br /> 0.33920072 -0.06890829 -0.66008945 -0.05657858 \<br /> 0.41086480 0.43178750 0.34701981 0.56191587 \<br /> 0.07780933 -0.37122218 -0.48779127 -0.29584131 \<br /> 0.61275557 -0.28760007 0.12797954 -0.33205509 \<br /> -0.16596486 -0.18710127 -0.08773388 -0.13379421 \<br /> -0.07088258 0.38167173 -0.06982859 0.41907067 \<br /> -0.26377930 0.17962823 -0.39046548 0.27734216 \<br /> 0.41304093 -0.02350620 0.32698726 -0.27566595 \<br /> 0.18468180 -0.17834242 0.41092013 -0.24048359 \<br /> 0.01346700 0.25675233 0.18876254 -0.08601800 \<br /> 0.14782264 0.01516420 -0.53182213 -0.27276365 \<br /> -0.20876160 -0.16313939 -0.28901179 -0.42238730 \<br /> -0.11985093 0.32779295 -0.10580440 -0.41967254 \<br /> 0.64187108 0.45148796 0.42447993 -0.40944528 \<br /> 0.05696213 -0.42716787 0.08969633 -0.83621638 \<br /> 0.01690127 0.49465279 -0.67083393 0.16914423 \<br /> -0.16053069 -0.09958014 -0.13473726 -0.32510009 \<br /> -0.17095192 0.15011910 0.28359132 0.00507247 \<br /> 0.71264642 -2.62232155 0.23460307 -0.55300650 \<br /> 0.00000000 0.00000000 -0.33234785 0.04870643 \<br /> 0.85134007 0.30142704 -0.06217931 0.37417401 \<br /> 0.18754175 0.33967217 -0.29402339 0.46378184 \<br /> 0.36412728 -0.00106759 0.31144078 0.71262755 \<br /> 0.19963932 -0.82773652 0.12937021 -0.11971152<br /> <br /> }<br /> }<br /> <br /> distl {<br /> detector_tiling = None<br /> peripheral_margin = 1<br /> quad_translations = -3 -4 -3 -7 -12 0 -7 -5 <br /> }<br /> distl {<br /> tile_translations = &quot;&quot;&quot;<br /> 1, 0, 1, 0, 0, 0, 0, 0,<br /> 1, -1, 1, -1, 3, 0, 3, 0,<br /> 1, -3, 1, -3, 1, -3, 1, -3,<br /> 0, -4, 0, -4, 0, -2, 0, -2,<br /> <br /> 0, 1, 0, 1, 1, 1, 1, 1,<br /> -1, 1, -1, 1, 0, 1, 0, 1,<br /> -1, 1, -1, 1, 0, 2, 0, 2,<br /> 0, 2, 0, 2, 0, 1, 0, 1,<br /> <br /> 0, 1, 0, 1, 0, 1, 0, 1,<br /> -1, 1, -1, 1, -1, 0, -1, 0,<br /> -1, 1, -1, 1, -1, 1, -1, 1,<br /> 0, 1, 0, 1, -1, 1, -1, 1,<br /> <br /> 0, -1, 0, -1, 0, 0, 0, 0,<br /> 0, -3, 0, -3, 0, -3, 0, -3,<br /> -1, -1, -1, -1, -1, -1, -1, -1,<br /> -1, 0, -1, 0, 0, 0, 0, 0<br /> &quot;&quot;&quot;}<br /> <br /> # This is from 2tli.<br /> target_cell = 94 94 130 90 90 120<br /> known_setting = 12<br /> <br /> distl_highres_limit = 1.8<br /> force_method2_resolution_limit = 1.8<br /> <br /> mosaicity_limit = 1<br /> <br /> # Set to True to pick up second lattice, if present.<br /> #indexing.outlier_detection.switch = True<br /> <br /> distl {<br /> res.outer = 1.8<br /> minimum_signal_height = 5<br /> minimum_spot_height = 10<br /> minimum_spot_area = 1<br /> spot_area_maximum_factor = 20<br /> compactness_filter = False<br /> method2_cutoff_percentage = 5<br /> <br /> # Avoids intensity filter.<br /> peak_intensity_maximum_factor = 10000<br /> }<br /> <br /> indexing {<br /> # Set to True to generate correction vectors.<br /> verbose_cv = True<br /> }<br /> <br /> integration {<br /> background_factor = 2<br /> detector_gain = 1.0<br /> <br /> #model = use_case_3_simulated_annealing_7<br /> model = user_supplied<br /> <br /> signal_penetration = 0.5<br /> #spot_shape_verbose = True<br /> spotfinder_subset = spots_non-ice<br /> mosaic {<br /> refinement_target=ML<br /> kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing<br /> domain_size_lower_limit=10.<br /> }<br /> <br /> }<br /> &lt;/pre&gt;</div>

Nicksauter