http://viper.lbl.gov:8080/cctbx.xfel/index.php?action=history&feed=atom&title=L498-thermolysin-t001.phil 2026-05-12T22:17:01Z Revision history for this page on the wiki MediaWiki 1.39.15 http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=L498-thermolysin-t001.phil&diff=560&oldid=prev 2014-08-22T05:54:34Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:54, 22 August 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l60">Line 60:</td> <td colspan="2" class="diff-lineno">Line 60:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>integration {</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>integration {</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">  mask_pixel_value=-2</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   background_factor = 2</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   background_factor = 2</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   detector_gain = 1.0</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   detector_gain = 1.0</div></td></tr> </table>

Nicksauter http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=L498-thermolysin-t001.phil&diff=555&oldid=prev 2014-08-22T05:38:04Z

<p>Created page with &quot;&lt;pre&gt; # -*- mode: conf -*- #include file /reg/neh/home3/nksauter/myrelease/cxi84914/L498-subpixel.phil distl { detector_tiling = None peripheral_margin = 1 quad_transla...&quot;</p> <p><b>New page</b></p><div>&lt;pre&gt;<br /> # -*- mode: conf -*-<br /> <br /> #include file /reg/neh/home3/nksauter/myrelease/cxi84914/L498-subpixel.phil<br /> distl {<br /> detector_tiling = None<br /> peripheral_margin = 1<br /> quad_translations = -3 -4 -3 -7 -12 0 -7 -5<br /> tile_translations = &quot;&quot;&quot;<br /> 1, -1, 1, -1, 0, -1, 0, -1, <br /> 0, -2, 0, -2, 2, -1, 2, -1, <br /> 1, -3, 1, -3, 0, -3, 0, -3, <br /> 0, -4, 0, -4, 0, -2, 0, -2, <br /> <br /> -1, 1, -1, 1, -1, 1, -1, 1, <br /> -2, 2, -2, 2, -2, 2, -2, 2, <br /> -2, 2, -2, 2, -1, 2, -1, 2, <br /> 0, 2, 0, 2, -1, 1, -1, 1, <br /> <br /> 1, 2, 1, 2, 0, 2, 0, 2, <br /> 1, 2, 1, 2, 0, 1, 0, 1, <br /> 0, 1, 0, 1, 0, 1, 0, 1, <br /> 1, 1, 1, 1, 0, 1, 0, 1, <br /> <br /> 1, -1, 1, -1, 1, 0, 1, 0, <br /> 1, -3, 1, -3, 2, -4, 2, -4, <br /> -1, -2, -1, -2, 0, -3, 0, -3, <br /> -1, -1, -1, -1, 0, 0, 0, 0 &quot;&quot;&quot;<br /> }<br /> <br /> # This is from 2tli.<br /> target_cell = 94 94 130 90 90 120<br /> known_setting = 12<br /> <br /> distl_highres_limit = 1.8<br /> force_method2_resolution_limit = 1.8<br /> <br /> mosaicity_limit = 1<br /> <br /> # Set to True to pick up second lattice, if present.<br /> #indexing.outlier_detection.switch = True<br /> <br /> distl {<br /> res.outer = 1.8<br /> minimum_signal_height = 5<br /> minimum_spot_height = 10<br /> minimum_spot_area = 1<br /> spot_area_maximum_factor = 20<br /> compactness_filter = False<br /> method2_cutoff_percentage = 5<br /> <br /> # Avoids intensity filter.<br /> peak_intensity_maximum_factor = 10000<br /> }<br /> <br /> indexing {<br /> # Set to True to generate correction vectors.<br /> verbose_cv = True<br /> }<br /> <br /> integration {<br /> background_factor = 2<br /> detector_gain = 1.0<br /> <br /> #model = use_case_3_simulated_annealing_7<br /> model = user_supplied<br /> <br /> signal_penetration = 0.5<br /> #spot_shape_verbose = True<br /> spotfinder_subset = spots_non-ice<br /> mosaic {<br /> refinement_target=ML<br /> kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing<br /> domain_size_lower_limit=10.<br /> }<br /> <br /> }<br /> &lt;/pre&gt;</div>

Nicksauter