Ha14 Tutorials - Revision history

Aaron at 23:05, 6 November 2018

2018-11-06T23:05:20Z

← Older revision		Revision as of 23:05, 6 November 2018
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	* ''[[cctbx.prime]]'': Merging using the ''prime.postrefine'' program.		* ''[[cctbx.prime]]'': Merging using the ''prime.postrefine'' program.
	* [[Resolving an Indexing Ambiguity]]		* [[Resolving an Indexing Ambiguity]]

			Processing outside of LCLS can be done by [[Indexing individual stills]]

	Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.		Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.

	[[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper.		[[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper.

Aaron: Aaron moved page Tutorials to Ha14 Tutorials: deprecated tutorials

2018-11-06T22:45:30Z

Aaron moved page Tutorials to Ha14 Tutorials: deprecated tutorials

← Older revision	Revision as of 22:45, 6 November 2018
(No difference)

Aaron at 22:34, 6 November 2018

2018-11-06T22:34:46Z

← Older revision		Revision as of 22:34, 6 November 2018
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	~~These tutorials assumes the steps outlined~~ in [~~[setup~~]~~] have been followed first~~. Processing xfel data at LCLS consists of four steps:		THIS PAGE IS DEPRECATED. This page details processing procedures described in [https://doi.org/10.1038/nmeth.2887 Hattne 2014] (Ha14), using LABELIT for initial indexing and stills-specific refinement and integration code implemented in the package ''cctbx.rstbx''

			Processing xfel data at LCLS consists of four steps:

	* Averaging and other [[Preparatory steps]]		* Averaging and other [[Preparatory steps]]

Aaron at 20:26, 1 May 2015

2015-05-01T20:26:47Z

← Older revision		Revision as of 20:26, 1 May 2015
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	* [[Merging]]		* [[Merging]]
	* [[Advanced Merging]]: Use cases for isomorphous replacement and <em>de novo</em> structure		* [[Advanced Merging]]: Use cases for isomorphous replacement and <em>de novo</em> structure
			* ''[[cctbx.prime]]'': Merging using the ''prime.postrefine'' program.
	* [[Resolving an Indexing Ambiguity]]		* [[Resolving an Indexing Ambiguity]]

Aaron at 00:37, 12 December 2014

2014-12-12T00:37:55Z

New page

These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps:

* Averaging and other [[Preparatory steps]]
* [[Metrology refinement]]
* [[Indexing and integration]]. Optional steps:
** Real-time [[progress monitoring]].
** Streaming [[data viewer]].
** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''.
* [[Merging]]
* [[Advanced Merging]]: Use cases for isomorphous replacement and <em>de novo</em> structure
* [[Resolving an Indexing Ambiguity]]

Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.

[[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper.

Hattne: Added link to L498 thermolysin reprocessing page

2014-03-10T06:44:51Z

Added link to L498 thermolysin reprocessing page

New page

These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps:

* [[Preparatory steps]]
* [[Metrology refinement]]
* [[Indexing and integration]]. Optional steps:
** Real-time [[progress monitoring]].
** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''.
* [[Merging]]
* [[Advanced Merging]]: Use cases for isomorphous replacement and <em>de novo</em> structure
* [[Resolving an Indexing Ambiguity]]

Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.

[[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper.

Hattne: Reflect move of preprocessing page.

2013-10-15T22:52:42Z

Reflect move of preprocessing page.

← Older revision		Revision as of 22:52, 15 October 2013
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	These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps:		These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps:

	* [[~~Pre-processing~~]]		* [[Preparatory steps]]
	* [[Metrology refinement]]		* [[Metrology refinement]]
	* [[Indexing and integration]]. Optional steps:		* [[Indexing and integration]]. Optional steps:

Aaron at 04:16, 4 October 2013

2013-10-04T04:16:10Z

← Older revision		Revision as of 04:16, 4 October 2013
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	** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''.		** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''.
	* [[Merging]]		* [[Merging]]

			Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.

Aaron at 21:35, 3 October 2013

2013-10-03T21:35:15Z

← Older revision		Revision as of 21:35, 3 October 2013
Line 3:		Line 3:
	* [[Pre-processing]]		* [[Pre-processing]]
	* [[Metrology refinement]]		* [[Metrology refinement]]
	* [[Indexing and integration]]		* [[Indexing and integration]]. Optional steps:
			** Real-time [[progress monitoring]].
			** Configuring specific spotfinder, indexing and integration parameters using ''[[phil]]''.
	* [[Merging]]		* [[Merging]]

	~~''cctbx.xfel'' also features real-time [[progress monitoring]].~~

Aaron at 17:20, 1 October 2013

2013-10-01T17:20:06Z

← Older revision		Revision as of 17:20, 1 October 2013
Line 5:		Line 5:
	* [[Indexing and integration]]		* [[Indexing and integration]]
	* [[Merging]]		* [[Merging]]

			''cctbx.xfel'' also features real-time [[progress monitoring]].