Gd-Lysozyme-t005.phil - Revision history

Tara at 21:41, 26 September 2014

2014-09-26T21:41:27Z

Tara at 21:40, 26 September 2014

2014-09-26T21:40:24Z

@@ Line 1: / Line 1: @@
 <pre>
 # -*- mode: conf -*-
 distl {

Tara: Created page with "

 # -*- mode: conf -*-  distl {   detector_tiling = None   peripheral_margin = 1   quad_translations =2 -6 4 -6 -6 1 0 -4   tile_translations = """        2,  1,  2,  1,..."

2014-09-26T05:54:41Z

Created page with "<pre> # -*- mode: conf -*- distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 tile_translations = """ 2, 1, 2, 1,..."

New page

<pre>
# -*- mode: conf -*-

distl {
detector_tiling = None
peripheral_margin = 1
quad_translations =2 -6 4 -6 -6 1 0 -4
tile_translations = """
2, 1, 2, 1, 1, 2, 1, 2,
1, 0, 1, 0, 4, 1, 4, 1,
2, -2, 2, -2, 0, 0, 0, 0,
0, -2, 0, -2, 0, 0, 0, 0,

-1, 0, -1, 0, 0, -1, 0, -1,
-2, 1, -2, 1, -2, 1, -2, 1,
-2, 0, -2, 0, 0, 0, 0, 0,
0, 0, 0, 0, -1, 0, -1, 0,

-1, 0, -1, 0, -1, 0, -1, 0,
-1, 0, -1, 0, -1, -1, -1, -1,
-2, 0, -2, 0, 0, 0, 0, 0,
-2, 0, -2, 0, -2, -1, -2, -1,

0, -2, 0, -2, 0, -1, 0, -1,
-1, -4, -1, -4, 0, -4, 0, -4,
-1, -3, -1, -3, 0, 0, 0, 0,
-2, -2, -2, -2, 0, -1, 0, -1"""
}

# This is from 4ET8.
target_cell = 79 79 38 90 90 90
known_setting = 9

distl_highres_limit = 1.9
force_method2_resolution_limit = 1.9

mosaicity_limit = 1

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

distl {
res.outer = 1.9
minimum_signal_height = 5
minimum_spot_height = 10
minimum_spot_area = 1
spot_area_maximum_factor = 20
compactness_filter = False
method2_cutoff_percentage = 5

# Avoids intensity filter.
peak_intensity_maximum_factor = 10000
}

indexing {
# Set to True to generate correction vectors.
verbose_cv = True
}

integration {
mask_pixel_value=-2
background_factor = 2
detector_gain = 1.0

#model = use_case_3_simulated_annealing_7
model = user_supplied

signal_penetration = 0.5
#spot_shape_verbose = True
spotfinder_subset = spots_non-ice
mosaic {
refinement_target=ML
kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing
domain_size_lower_limit=10.
}

}
</pre>