Gd-Lysozyme-t000.phil - Revision history

Tara at 23:58, 23 September 2014

2014-09-23T23:58:02Z

← Older revision		Revision as of 23:58, 23 September 2014
Line 33:		Line 33:

	# This is from 4ET8.		# This is from 4ET8.
	target_cell = 79 79 38 90 90 90		#target_cell = 79 79 38 90 90 90
	known_setting = 9		#known_setting = 9

	distl_highres_limit = 1.9		distl_highres_limit = 1.9

Tara at 23:48, 15 September 2014

2014-09-15T23:48:38Z

← Older revision		Revision as of 23:48, 15 September 2014
Line 6:		Line 6:
	peripheral_margin = 1		peripheral_margin = 1
	quad_translations =2 -6 4 -6 -6 1 0 -4		quad_translations =2 -6 4 -6 -6 1 0 -4
	}		tile_translations = """
	~~distl{~~
	tile_translations = """
	0, 0, 0, 0, 0, 0, 0, 0,		0, 0, 0, 0, 0, 0, 0, 0,
	0, 0, 0, 0, 0, 0, 0, 0,		0, 0, 0, 0, 0, 0, 0, 0,
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	0, 0, 0, 0, 0, 0, 0, 0,		0, 0, 0, 0, 0, 0, 0, 0,
	0, 0, 0, 0, 0, 0, 0, 0,		0, 0, 0, 0, 0, 0, 0, 0,
	0, 0, 0, 0, 0, 0, 0, 0, """		0, 0, 0, 0, 0, 0, 0, 0 """
	}		}

Tara at 23:46, 15 September 2014

2014-09-15T23:46:17Z

← Older revision		Revision as of 23:46, 15 September 2014
Line 7:		Line 7:
	quad_translations =2 -6 4 -6 -6 1 0 -4		quad_translations =2 -6 4 -6 -6 1 0 -4
	}		}
			distl{
	tile_translations = """		tile_translations = """
	1, -1, 1, -1, 0, -1, 0, -1,		0, 0, 0, 0, 0, 0, 0, 0,
	0, -2, 0, -2, 2, -1, 2, -1,		0, 0, 0, 0, 0, 0, 0, 0,
	1, -3, 1, -3, 0, -3, 0, -3,		0, 0, 0, 0, 0, 0, 0, 0,
	0, -4, 0, -4, 0, -2, 0, -2,		0, 0, 0, 0, 0, 0, 0, 0,

	-1, 1, -1, 1, -1, 1, ~~-1, 1~~,		0, 0, 0, 0, 0, 0, 0, 0,
	-2, 2, -2, 2, -2, 2, ~~-2, 2~~,		0, 0, 0, 0, 0, 0, 0, 0,
	-2, 2, -2, 2, -1, 2, -1, 2,		0, 0, 0, 0, 0, 0, 0, 0,
	0, 2, 0, 2, -1, 1, ~~-1, 1~~,		0, 0, 0, 0, 0, 0, 0, 0,

	1, 2, 1, 2, 0, 2, 0, 2,		0, 0, 0, 0, 0, 0, 0, 0,
	1, 2, 1, 2, 0, 1, 0, 1,		0, 0, 0, 0, 0, 0, 0, 0,
	0, 1, 0, 1, 0, 1, 0, 1,		0, 0, 0, 0, 0, 0, 0, 0,
	1, 1, 1, 1, 0, 1, 0, 1,		0, 0, 0, 0, 0, 0, 0, 0,

	1, -1, 1, -1, 1, 0, 1, 0,		0, 0, 0, 0, 0, 0, 0, 0,
	1, -3, 1, -3, 2, -4, 2, -4,		0, 0, 0, 0, 0, 0, 0, 0,
	-1, -2, -1, -2, 0, -3, 0, -3,		0, 0, 0, 0, 0, 0, 0, 0,
	-1, -1, -1, -1, 0, 0, 0, 0 """		0, 0, 0, 0, 0, 0, 0, 0, """
	}		}

Tara at 23:41, 15 September 2014

2014-09-15T23:41:52Z

@@ Line 7: / Line 7: @@
    quad_translations =2 -6 4 -6 -6 1 0 -4
+}
 # This is from 4ET8.

Tara at 21:12, 12 September 2014

2014-09-12T21:12:49Z

← Older revision		Revision as of 21:12, 12 September 2014
Line 8:		Line 8:
	}		}

	# This is from ~~???~~		# This is from 4ET8.
	target_cell = 79 79 39 90 90 90		target_cell = 79 79 38 90 90 90
	known_setting = 9		known_setting = 9

	distl_highres_limit = 1.75		distl_highres_limit = 1.9
	force_method2_resolution_limit = 1.75		force_method2_resolution_limit = 1.9

	mosaicity_limit = 1		mosaicity_limit = 1
Line 21:		Line 21:

	distl {		distl {
	res.outer = 1.75		res.outer = 1.9
	minimum_signal_height = 5		minimum_signal_height = 5
	minimum_spot_height = 10		minimum_spot_height = 10

Tara: Created page with "

 # -*- mode: conf -*-  distl {   detector_tiling = None   peripheral_margin = 1   quad_translations =2 -6 4 -6 -6 1 0 -4 }  # This is from ??? target_cell = 79 79 39 90 9..."

2014-09-12T21:01:56Z

Created page with "<pre> # -*- mode: conf -*- distl { detector_tiling = None peripheral_margin = 1 quad_translations =2 -6 4 -6 -6 1 0 -4 } # This is from ??? target_cell = 79 79 39 90 9..."

New page

<pre>
# -*- mode: conf -*-

distl {
detector_tiling = None
peripheral_margin = 1
quad_translations =2 -6 4 -6 -6 1 0 -4
}

# This is from ???
target_cell = 79 79 39 90 90 90
known_setting = 9

distl_highres_limit = 1.75
force_method2_resolution_limit = 1.75

mosaicity_limit = 1

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

distl {
res.outer = 1.75
minimum_signal_height = 5
minimum_spot_height = 10
minimum_spot_area = 1
spot_area_maximum_factor = 20
compactness_filter = False
method2_cutoff_percentage = 5

# Avoids intensity filter.
peak_intensity_maximum_factor = 10000
}

indexing {
# Set to True to generate correction vectors.
verbose_cv = True
}

integration {
mask_pixel_value=-2
background_factor = 2
detector_gain = 1.0

#model = use_case_3_simulated_annealing_7
model = user_supplied

signal_penetration = 0.5
#spot_shape_verbose = True
spotfinder_subset = spots_non-ice
mosaic {
refinement_target=ML
kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing
domain_size_lower_limit=10.
}

}
</pre>