http://viper.lbl.gov:8080/cctbx.xfel/index.php?action=history&feed=atom&title=Gd-Lysozyme-3-t005.phil 2026-06-02T16:32:39Z Revision history for this page on the wiki MediaWiki 1.39.15 http://viper.lbl.gov:8080/cctbx.xfel/index.php?title=Gd-Lysozyme-3-t005.phil&diff=813&oldid=prev 2014-09-28T17:34:21Z

<p>Created page with &quot;&lt;pre&gt; # -*- mode: conf -*- integration { subpixel_joint_model { rotations= \ 0.09795939 0.08349210 -0.20361419 -0.20691617 \ -0.39923060 -0.54209480 -0.436535...&quot;</p> <p><b>New page</b></p><div>&lt;pre&gt;<br /> # -*- mode: conf -*-<br /> integration {<br /> subpixel_joint_model {<br /> rotations= \<br /> 0.09795939 0.08349210 -0.20361419 -0.20691617 \<br /> -0.39923060 -0.54209480 -0.43653566 -0.23003526 \<br /> -0.10242422 -0.40710596 0.00000000 -0.55354323 \<br /> -0.00227234 0.00971335 -0.10693288 -0.09601335 \<br /> 0.35732751 0.37366355 0.04993701 0.10813432 \<br /> 0.09209811 0.08719825 0.07085397 0.04337531 \<br /> 0.27509365 0.10691720 0.00000000 1.26418314 \<br /> 0.08784942 0.07443324 -0.01190203 -0.04532097 \<br /> -0.00512166 -0.01107914 -0.08955462 -0.08896718 \<br /> 0.00377937 -0.14850067 -0.15819279 0.01605924 \<br /> 0.10442629 0.30097014 0.00000000 0.00000000 \<br /> 0.14725246 0.12086300 -0.17581044 -0.18857045 \<br /> 0.03577268 0.00540184 0.15932964 0.13831522 \<br /> -0.34188415 -0.30083027 -0.11606445 -0.11739372 \<br /> -0.04008142 0.39361071 0.00000000 0.07115385 \<br /> -0.08882254 -0.22357834 -0.17866009 -0.17357300<br /> <br /> translations= \<br /> 0.01138666 0.08908748 0.30685503 -0.16366058 \<br /> -0.34040280 0.00489799 -0.13356964 0.82695198 \<br /> -1.63444789 1.00840212 -0.18990078 0.35456751 \<br /> -0.56781276 0.69371881 0.17613032 0.17960829 \<br /> 1.43806650 1.49706731 0.24298697 -0.11418696 \<br /> 0.00000000 0.00000000 -1.61039353 2.71622499 \<br /> 0.49659655 0.84873056 0.23416644 0.06339607 \<br /> -0.49159691 0.42130810 -0.28579630 -0.04771136 \<br /> 0.40396799 0.03458436 -0.78921824 -0.05107363 \<br /> 0.37149539 -0.24059200 0.18485137 -0.11352443 \<br /> 0.78171995 0.12776378 -0.19006243 0.35734808 \<br /> 0.91958122 -0.61123520 -0.35530928 -0.39124163 \<br /> 0.11105022 -0.07804747 0.24755727 0.30765233 \<br /> 0.00000000 0.00000000 0.50147000 -2.98063598 \<br /> 0.45326580 -0.13011659 0.19856685 0.29404793 \<br /> 0.25159805 -0.18185393 0.06139230 -0.03307170 \<br /> -0.06014947 0.15876686 0.36331151 0.19659868 \<br /> -0.09406686 0.52517409 0.32067849 0.27958553 \<br /> 0.81495141 0.23428511 0.27855604 0.12625253 \<br /> 0.56380094 -0.08960831 0.30332662 -0.19785159 \<br /> 0.10492892 0.69801869 -0.11844839 -0.10765278 \<br /> 0.00000000 0.00000000 0.00000000 0.00000000 \<br /> -0.65023906 0.12419634 -0.30540996 -0.27406762 \<br /> 0.22837869 -0.05066519 -0.40744436 -0.44822474 \<br /> -0.01954448 0.11462679 -0.02019565 -0.02985755 \<br /> -0.17024019 0.24236576 0.34553328 0.11662655 \<br /> 0.18911301 -0.95155061 0.34060711 -0.11830191 \<br /> 0.03180065 0.06591146 -0.17540330 0.33672156 \<br /> 0.32635750 0.54275894 -0.16189418 0.18520007 \<br /> 0.00000000 0.00000000 0.16967828 3.10354466 \<br /> 0.42318831 -0.84074715 0.43334905 -0.24389003 \<br /> 0.31224335 -0.41763206 0.16475690 0.22534555<br /> <br /> }<br /> }<br /> <br /> distl{<br /> detector_tiling = None<br /> peripheral_margin = 1<br /> quad_translations =2 -6 4 -6 -6 1 0 -4<br /> tile_translations = &quot;&quot;&quot;<br /> 2, 1, 2, 1, 1, 2, 1, 2,<br /> 1, 0, 1, 0, 4, 1, 4, 1,<br /> 2, -2, 2, -2, 0, 0, 0, 0,<br /> 0, -2, 0, -2, 0, 0, 0, 0,<br /> <br /> -1, 0, -1, 0, 0, -1, 0, -1,<br /> -2, 1, -2, 1, -2, 0, -2, 0,<br /> -2, 1, -2, 1, 0, 0, 0, 0,<br /> 0, 1, 0, 1, -1, 0, -1, 0,<br /> <br /> -1, 0, -1, 0, -1, 0, -1, 0,<br /> -1, 0, -1, 0, -1, -1, -1, -1,<br /> -2, 0, -2, 0, 0, 0, 0, 0,<br /> -2, 0, -2, 0, -2, -1, -2, -1,<br /> <br /> 0, -2, 0, -2, 0, -1, 0, -1,<br /> 0, -4, 0, -4, 0, -4, 0, -4,<br /> -1, -3, -1, -3, 0, 0, 0, 0,<br /> -1, -3, -1, -3, 0, -1, 0, -1&quot;&quot;&quot;<br /> }<br /> <br /> <br /> <br /> <br /> <br /> # This is from 4ET8.<br /> target_cell = 79 79 38 90 90 90<br /> known_setting = 9<br /> <br /> distl_highres_limit = 1.9<br /> force_method2_resolution_limit = 1.9<br /> <br /> mosaicity_limit = 1<br /> <br /> # Set to True to pick up second lattice, if present.<br /> #indexing.outlier_detection.switch = True<br /> <br /> distl {<br /> res.outer = 1.9<br /> minimum_signal_height = 5<br /> minimum_spot_height = 10<br /> minimum_spot_area = 1<br /> spot_area_maximum_factor = 20<br /> compactness_filter = False<br /> method2_cutoff_percentage = 5<br /> <br /> # Avoids intensity filter.<br /> peak_intensity_maximum_factor = 10000<br /> }<br /> <br /> indexing {<br /> # Set to True to generate correction vectors.<br /> verbose_cv = True<br /> }<br /> <br /> integration {<br /> mask_pixel_value=-2<br /> background_factor = 2<br /> detector_gain = 1.0<br /> <br /> #model = use_case_3_simulated_annealing_7<br /> model = user_supplied<br /> <br /> signal_penetration = 0.5<br /> #spot_shape_verbose = True<br /> spotfinder_subset = spots_non-ice<br /> mosaic {<br /> refinement_target=ML<br /> kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing<br /> domain_size_lower_limit=10.<br /> }<br /> <br /> }<br /> &lt;/pre&gt;</div>

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