Cppxfel Installation - Revision history

Nicksauter at 17:55, 16 December 2016

2016-12-16T17:55:39Z

← Older revision		Revision as of 17:55, 16 December 2016
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	== Alternate ''cppxfel''-''DIALS'' distribution for non-graphical High Performance Computing ==		== Alternate ''cppxfel''-''DIALS'' distribution for non-graphical High Performance Computing ==

	<span style="color:red"> Skip this section for typical use cases. On request from an HPC center, we give special instructions for building the Python library without importing graphics library code (instructions were tested on Centos 6.5). For a non-graphical installation do NOT start above with the DIALS ~~bundle~~, instead start HERE:		<span style="color:red"> Skip this section for typical use cases. On request from an HPC center, we give special instructions for building the Python library without importing graphics library code (instructions were tested on Centos 6.5). For a non-graphical installation do NOT start above with the DIALS distribution, instead start HERE:

	<pre>		<pre>

Nicksauter: /* Alternate cppxfel-DIALS distribution for non-graphical High Performance Computing */

2016-12-16T17:54:39Z

Alternate cppxfel-DIALS distribution for non-graphical High Performance Computing

← Older revision		Revision as of 17:54, 16 December 2016
Line 77:		Line 77:
	== Alternate ''cppxfel''-''DIALS'' distribution for non-graphical High Performance Computing ==		== Alternate ''cppxfel''-''DIALS'' distribution for non-graphical High Performance Computing ==

	<span style="color:red"> Skip this section for typical use cases. On request from an HPC center, we give special instructions for building the Python library without importing graphics library code.		<span style="color:red"> Skip this section for typical use cases. On request from an HPC center, we give special instructions for building the Python library without importing graphics library code (instructions were tested on Centos 6.5). For a non-graphical installation do NOT start above with the DIALS bundle, instead start HERE:
	~~This was~~ tested on Centos 6.5:

	<pre>		<pre>

Nicksauter at 23:43, 15 December 2016

2016-12-15T23:43:14Z

@@ Line 69: / Line 69: @@
 | <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.csh && \
 source /absolute/path/to/dials/dials-dev-508/build/setpaths.csh</code>
+|
 |-

Helenginn at 16:30, 30 November 2015

2015-11-30T16:30:57Z

← Older revision		Revision as of 16:30, 30 November 2015
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	\|-		\|-
	\| <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.sh && \		\| <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.sh && \
	. /absolute/path/to/dials/build/setpaths.sh</code>		. /absolute/path/to/dials/dials-dev-508/build/setpaths.sh</code>
	\| <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.csh && \		\| <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.csh && \
	source /absolute/path/to/dials/build/setpaths.csh</code>		source /absolute/path/to/dials/dials-dev-508/build/setpaths.csh</code>
	\|		\|
	\|-		\|-

Helenginn at 15:50, 30 November 2015

2015-11-30T15:50:09Z

← Older revision		Revision as of 15:50, 30 November 2015
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	! Csh shell		! Csh shell
	\|-		\|-
	\| <code>. /absolute/path/to/dials/build/setpaths.sh</code>		\| <code>. /absolute/path/to/dials/dials-dev-508/build/setpaths.sh</code>
	\| <code>source /absolute/path/to/dials/build/setpaths.csh</code>		\| <code>source /absolute/path/to/dials/dials-dev-508/build/setpaths.csh</code>
	\|}		\|}

Line 65:		Line 65:
	! Csh shell		! Csh shell
	\|-		\|-
	\| <code>test -r /absolute/path/to/dials/build/setpaths.sh && \		\| <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.sh && \
	. /absolute/path/to/dials/build/setpaths.sh</code>		. /absolute/path/to/dials/build/setpaths.sh</code>
	\| <code>test -r /absolute/path/to/dials/build/setpaths.csh && \		\| <code>test -r /absolute/path/to/dials/dials-dev-508/build/setpaths.csh && \
	source /absolute/path/to/dials/build/setpaths.csh</code>		source /absolute/path/to/dials/build/setpaths.csh</code>
	\|		\|

Helenginn at 15:49, 30 November 2015

2015-11-30T15:49:29Z

← Older revision		Revision as of 15:49, 30 November 2015
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	== ''cppxfel'' distribution ==		== ''cppxfel'' distribution ==

	The ''cppxfel'' source code must be downloaded into the <code>modules</code> directory.		The ''cppxfel'' source code must be downloaded into the <code>modules</code> directory. Navigate to this directory, e.g.

	<pre>cd /absolute/path/to/dials/modules</pre>		<pre>cd /absolute/path/to/dials/dials-dev-508/modules</pre>

	The repository can be cloned from the GitHub link for cppxfel.		The repository can be cloned from the GitHub link for cppxfel.

Helenginn at 15:43, 30 November 2015

2015-11-30T15:43:19Z

← Older revision		Revision as of 15:43, 30 November 2015
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	== DIALS distribution ==		== DIALS distribution ==

	Download the DIALS distribution for your flavour of OS (see [[http://cci.lbl.gov/dials/installers/ list of latest builds]]) from [[http://dials.github.io/installation.html the DIALS website]]. Ensure the distribution downloaded was compiled on 29th November or later for Boost thread support. Extract the dials-installer-dev to a new location. Navigate into this directory, e.g.:		Download the DIALS distribution for your flavour of OS (see [[http://cci.lbl.gov/dials/installers/ list of latest builds]]) from [[http://dials.github.io/installation.html the DIALS website]]. Ensure the distribution downloaded was compiled on 29th November 2015 or later for Boost thread support. Extract the dials-installer-dev to a new location. Navigate into this directory, e.g.:

	<pre>cd dials-installer-dev</pre>		<pre>cd dials-installer-dev</pre>

Helenginn at 15:10, 30 November 2015

2015-11-30T15:10:00Z

@@ Line 3: / Line 3: @@
 * DIALS distribution - provides the ''cctbx'' libraries for L-BFGS refinement and some crystallographic functions, and the indexing algorithms from DIALS itself.
 * ''cppxfel'' distribution - primarily written in C++, but some Python scripts to automate DIALS indexing and prepare the results for input into ''cppxfel''.
-'''These installation instructions are not finished and will not currently result in a working version of cppxfel.'''
+These installation instructions have been tested on CentOS 7.
 == DIALS distribution ==
-Download the DIALS distribution for your flavour of OS from [[http://dials.github.io/installation.html the DIALS website]]. Ensure the distribution downloaded was compiled on 29th November or later (see [[http://cci.lbl.gov/dials/installers/ list of latest builds]]). Extract the dials-installer-dev to a new location. Navigate into this directory, e.g.:
+Download the DIALS distribution for your flavour of OS (see [[http://cci.lbl.gov/dials/installers/ list of latest builds]]) from [[http://dials.github.io/installation.html the DIALS website]]. Ensure the distribution downloaded was compiled on 29th November or later for Boost thread support. Extract the dials-installer-dev to a new location. Navigate into this directory, e.g.:
 <pre>cd dials-installer-dev</pre>

Helenginn at 15:09, 30 November 2015

2015-11-30T15:09:02Z

← Older revision		Revision as of 15:09, 30 November 2015
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	== DIALS distribution ==		== DIALS distribution ==

	Download the DIALS distribution for your flavour of OS from [[http://dials.github.io/installation.html the DIALS website]]. Ensure the distribution downloaded was compiled on 29th November or later (see [[http://cci.lbl.gov/dials/installers/ list of latest builds]]). Extract the dials-installer-dev to a new location. Navigate into this directory.		Download the DIALS distribution for your flavour of OS from [[http://dials.github.io/installation.html the DIALS website]]. Ensure the distribution downloaded was compiled on 29th November or later (see [[http://cci.lbl.gov/dials/installers/ list of latest builds]]). Extract the dials-installer-dev to a new location. Navigate into this directory, e.g.:

	<pre>cd dials-installer-dev</pre>		<pre>cd dials-installer-dev</pre>

Helenginn at 15:08, 30 November 2015

2015-11-30T15:08:36Z

← Older revision		Revision as of 15:08, 30 November 2015
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	Set the paths to the DIALS and cppxfel command line tools (bash):		Set the paths to the DIALS and cppxfel command line tools (bash):

	~~. /absolute/path/to/dials/build/setpaths.sh~~

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