2017 Tutorials - Revision history

Aaron: /* Feb 16th */

2017-03-02T00:17:30Z

Feb 16th

← Older revision		Revision as of 00:17, 2 March 2017
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	9:00am: Session 1		9:00am: Session 1

	*Nick Sauter: Welcome and "Trials and tribulations merging still image data"		*Nick Sauter: Welcome and "Trials and tribulations merging still image data"

	*Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"		*Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"

	*Axel Brunger: "Data processing of XFEL data from a limited number of crystals"		*Axel Brunger: "Data processing of XFEL data from a limited number of crystals"

Line 12:		Line 9:

	10:40am: Session 2		10:40am: Session 2

	*Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"		*Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"

	*Monarin Uervirojnangkoorn: "Up and Running with Prime"		*Monarin Uervirojnangkoorn: "Up and Running with Prime"

	*Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"		*Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"

	*James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"		*James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"

Line 24:		Line 17:

	1:00pm: Session 3		1:00pm: Session 3

	*Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"		*Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"

	*James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"		*James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"
			*Jan Kern: "Challenges and Promises for serial crystallography of metalloenzymes at XFELs"
	*Jan Kern: ~~TBD~~

	*Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"		*Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"

	*Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"		*Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"

Line 38:		Line 26:

	3:00pm: Session 4		3:00pm: Session 4
			*Aina Cohen: "Serial crystallography approaches at LCLS-MFX and the SSRL micro-focus beamlines 12-1 and 12-2"
	*Aina Cohen: ~~TBD~~

	*Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"		*Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"

	*Danny Axford: "Highly efficient serial data collection from high-density fixed targets"		*Danny Axford: "Highly efficient serial data collection from high-density fixed targets"

	*Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"		*Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"
			*Allen Orville: "Time-resolved SFX with less sample, over longer reactions, and including complementary methods"
	*Allen Orville: ~~TBD~~

	= Feb 17th =		= Feb 17th =

Aaron: /* 10:15 am: Tutorials 2 */

2017-02-17T18:05:57Z

10:15 am: Tutorials 2

← Older revision		Revision as of 18:05, 17 February 2017
Line 55:		Line 55:
	Break: 10:00 am		Break: 10:00 am
	== 10:15 am: Tutorials 2 ==		== 10:15 am: Tutorials 2 ==
	* Aaron Brewster and James Parkhurst: dials.stills_process		* Aaron Brewster and James Parkhurst: [[2017_dials.stills_process \| dials.stills_process]]
	* Art Lyubimov: IOTA		* Art Lyubimov: IOTA
	* Monarin Uervirojnangkoorn: [[2017_prime_tutorial \| PRIME]]		* Monarin Uervirojnangkoorn: [[2017_prime_tutorial \| PRIME]]

Nicksauter: /* Feb 16th */

2017-02-17T17:32:04Z

Feb 16th

← Older revision		Revision as of 17:32, 17 February 2017
Line 3:		Line 3:
	9:00am: Session 1		9:00am: Session 1

	Nick Sauter: Welcome and "Trials and tribulations merging still image data"		*Nick Sauter: Welcome and "Trials and tribulations merging still image data"

	Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"		*Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"

	Axel Brunger: "Data processing of XFEL data from a limited number of crystals"		*Axel Brunger: "Data processing of XFEL data from a limited number of crystals"

	10:20am: Break		10:20am: Break
Line 13:		Line 13:
	10:40am: Session 2		10:40am: Session 2

	Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"		*Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"

	Monarin Uervirojnangkoorn: "Up and Running with Prime"		*Monarin Uervirojnangkoorn: "Up and Running with Prime"

	Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"		*Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"

	James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"		*James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"

	Noon: Working Lunch - Roundtable discussion of data processing challenges		Noon: Working Lunch - Roundtable discussion of data processing challenges
Line 25:		Line 25:
	1:00pm: Session 3		1:00pm: Session 3

	Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"		*Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"

	James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"		*James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"

	Jan Kern: TBD		*Jan Kern: TBD

	Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"		*Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"

	Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"		*Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"

	2:40pm: Break		2:40pm: Break
Line 39:		Line 39:
	3:00pm: Session 4		3:00pm: Session 4

	Aina Cohen: TBD		*Aina Cohen: TBD

	Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"		*Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"

	Danny Axford: "Highly efficient serial data collection from high-density fixed targets"		*Danny Axford: "Highly efficient serial data collection from high-density fixed targets"

	Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"		*Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"

	Allen Orville: TBD		*Allen Orville: TBD

	= Feb 17th =		= Feb 17th =

Nicksauter: /* Feb 16th */

2017-02-17T15:02:00Z

Feb 16th

← Older revision		Revision as of 15:02, 17 February 2017
Line 2:		Line 2:

	9:00am: Session 1		9:00am: Session 1

	Nick Sauter: Welcome and "Trials and tribulations merging still image data"		Nick Sauter: Welcome and "Trials and tribulations merging still image data"

	Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"		Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"

	Axel Brunger: "Data processing of XFEL data from a limited number of crystals"		Axel Brunger: "Data processing of XFEL data from a limited number of crystals"

	10:20am: Break		10:20am: Break

	10:40am: Session 2		10:40am: Session 2

	Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"		Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"

	Monarin Uervirojnangkoorn: "Up and Running with Prime"		Monarin Uervirojnangkoorn: "Up and Running with Prime"

	Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"		Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"

	James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"		James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"

	Noon: Working Lunch - Roundtable discussion of data processing challenges		Noon: Working Lunch - Roundtable discussion of data processing challenges

	1:00pm: Session 3		1:00pm: Session 3

	Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"		Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"

	James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"		James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"

	Jan Kern: TBD		Jan Kern: TBD

	Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"		Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"

	Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"		Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"

	2:40pm: Break		2:40pm: Break

	3:00pm: Session 4		3:00pm: Session 4

	Aina Cohen: TBD		Aina Cohen: TBD

	Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"		Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"

	Danny Axford: "Highly efficient serial data collection from high-density fixed targets"		Danny Axford: "Highly efficient serial data collection from high-density fixed targets"

	Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"		Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"

	Allen Orville: TBD		Allen Orville: TBD

	= Feb 17th =		= Feb 17th =

Mona: /* 10:15 am: Tutorials 2 */

2017-02-14T17:39:29Z

10:15 am: Tutorials 2

← Older revision		Revision as of 17:39, 14 February 2017
Line 33:		Line 33:
	* Aaron Brewster and James Parkhurst: dials.stills_process		* Aaron Brewster and James Parkhurst: dials.stills_process
	* Art Lyubimov: IOTA		* Art Lyubimov: IOTA
	* Monarin Uervirojnangkoorn: PRIME		* Monarin Uervirojnangkoorn: [[2017_prime_tutorial \| PRIME]]
	* Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]		* Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]

Nicksauter: /* 10:15 am: Tutorials 2 */

2017-02-08T23:19:32Z

10:15 am: Tutorials 2

← Older revision		Revision as of 23:19, 8 February 2017
Line 31:		Line 31:
	Break: 10:00 am		Break: 10:00 am
	== 10:15 am: Tutorials 2 ==		== 10:15 am: Tutorials 2 ==
	Aaron Brewster and James Parkhurst: dials.stills_process		* Aaron Brewster and James Parkhurst: dials.stills_process
	Art Lyubimov: IOTA		* Art Lyubimov: IOTA
	Monarin Uervirojnangkoorn: PRIME		* Monarin Uervirojnangkoorn: PRIME
	Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]		* Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]

	== 12:15pm-2:30pm: Round table discussion. ==		== 12:15pm-2:30pm: Round table discussion. ==

Nicksauter: /* 10:15 am: Tutorials 2 */

2017-02-08T23:18:40Z

10:15 am: Tutorials 2

← Older revision		Revision as of 23:18, 8 February 2017
Line 35:		Line 35:
	Monarin Uervirojnangkoorn: PRIME		Monarin Uervirojnangkoorn: PRIME
	Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]		Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]

	== 12:15pm-2:30pm: Round table discussion. ==		== 12:15pm-2:30pm: Round table discussion. ==
	Topics will include:		Topics will include:

Nicksauter at 23:12, 8 February 2017

2017-02-08T23:12:55Z

← Older revision		Revision as of 23:12, 8 February 2017
Line 34:		Line 34:
	Art Lyubimov: IOTA		Art Lyubimov: IOTA
	Monarin Uervirojnangkoorn: PRIME		Monarin Uervirojnangkoorn: PRIME
	Nick Sauter: cxi.merge		Nick Sauter: [[2017_cxi_merge_tutorial \| cxi.merge]]
	== 12:15pm-2:30pm: Round table discussion. == Topics will include:		== 12:15pm-2:30pm: Round table discussion. ==
			Topics will include:
	Is the current software meeting needs?		Is the current software meeting needs?
	What are essential/timely avenues most useful for near-term development (first half of 2017)?		What are essential/timely avenues most useful for near-term development (first half of 2017)?
Line 41:		Line 42:
	Time resolved experiments?		Time resolved experiments?
	Synchrotron serial crystallography?		Synchrotron serial crystallography?
	2:30-4pm: Breakout sessions: users work with developers and instructors on their own data. Hands-on walkthroughs and data analysis.		== 2:30-4pm: Breakout sessions: ==
			users work with developers and instructors on their own data. Hands-on walkthroughs and data analysis.

Nicksauter: /* Feb 17th */

2017-02-08T23:12:04Z

Feb 17th

← Older revision		Revision as of 23:12, 8 February 2017
Line 27:		Line 27:
	= Feb 17th =		= Feb 17th =

	9am: Tutorials 1		== 9am: Tutorials 1 ==
	Aaron Brewster and Iris Young: cctbx.xfel		Aaron Brewster and Iris Young: cctbx.xfel
	Break: 10:00 am		Break: 10:00 am
	10:15 am: Tutorials 2		== 10:15 am: Tutorials 2 ==
	Aaron Brewster and James Parkhurst: dials.stills_process		Aaron Brewster and James Parkhurst: dials.stills_process
	Art Lyubimov: IOTA		Art Lyubimov: IOTA
	Monarin Uervirojnangkoorn: PRIME		Monarin Uervirojnangkoorn: PRIME
	Nick Sauter: cxi.merge		Nick Sauter: cxi.merge
	12:15pm-2:30pm: Round table discussion. Topics will include:		== 12:15pm-2:30pm: Round table discussion. == Topics will include:
	Is the current software meeting needs?		Is the current software meeting needs?
	What are essential/timely avenues most useful for near-term development (first half of 2017)?		What are essential/timely avenues most useful for near-term development (first half of 2017)?

Nicksauter at 23:11, 8 February 2017

2017-02-08T23:11:05Z

← Older revision		Revision as of 23:11, 8 February 2017
Line 1:		Line 1:
	Feb 16th		= Feb 16th =

	9:00am: Session 1		9:00am: Session 1
Line 25:		Line 25:
	Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"		Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"
	Allen Orville: TBD		Allen Orville: TBD
	Feb 17th		= Feb 17th =

	9am: Tutorials 1		9am: Tutorials 1