2014 Prerequisites - Revision history

Aaron: /* Set up PSDM */

2014-08-23T01:13:47Z

Set up PSDM

← Older revision		Revision as of 01:13, 23 August 2014
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	test -r /reg/g/psdm/etc/ana_env.sh && . /reg/g/psdm/etc/ana_env.sh		test -r /reg/g/psdm/etc/ana_env.sh && . /reg/g/psdm/etc/ana_env.sh

			Make sure your .bash_profile file invokes your .bashrc file by adding this to it:

			test -r "${HOME}/.bashrc" && . "${HOME}/.bashrc"

	Then execute these commands from your home folder:		Then execute these commands from your home folder:

Aaron at 21:57, 22 August 2014

2014-08-22T21:57:42Z

@@ Line 1: / Line 1: @@
 We would like all users at the BioXFEL workshop to be using the same set of ''cctbx.xfel'' sources.  To this end, please be sure you do not source any locally downloaded or installed ''phenix'' or ''cctbx'' versions in your .bashrc or .cshrc files.  Instead, follow the instructions below to use the sources installed for general users at SLAC.
 You may find the general [[overview]] to be useful first.
@@ Line 5: / Line 7: @@
 ==== Set up PSDM ====
-The Photon Science Data Management (PSDM) system provides pyana, and is required for reading the raw data saved by the CSPAD detector.  Follow the instructions at [[Set up PSDM software]], using the PSDM suite installed at SLAC.
+The Photon Science Data Management (PSDM) system provides pyana, and is required for reading the raw data saved by the CSPAD detector.  Follow the instructions at [[Set up PSDM software]], using the PSDM suite installed at SLAC, or simply add this to your .bashrc file:
 ==== Set up ''cctbx.xfel'' ====
-''cctbx.xfel'' is installed for general users at SLAC and maintained by the ''cctbx.xfel'' team.  Follow the [[Setup | setup instructions for "cctbx.xfel"]], using the SLAC sources as described.
+''cctbx.xfel'' is installed for general users at SLAC and maintained by the ''cctbx.xfel'' team.  Follow the [[Setup | setup instructions for ''cctbx.xfel'']], using the SLAC sources as described, or simply add this to your .bashrc file:

Aaron at 21:59, 18 August 2014

2014-08-18T21:59:50Z

← Older revision		Revision as of 21:59, 18 August 2014
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	==== Set up PSDM ====		==== Set up PSDM ====

	The Photon Science Data Management (PSDM) system provides pyana, and is required for reading the raw data saved by the CSPAD detector. Follow the instructions at [[Set up PSDM software]] ~~first~~, using the PSDM suite installed at SLAC.		The Photon Science Data Management (PSDM) system provides pyana, and is required for reading the raw data saved by the CSPAD detector. Follow the instructions at [[Set up PSDM software]], using the PSDM suite installed at SLAC.

	==== Set up ''cctbx.xfel'' ====		==== Set up ''cctbx.xfel'' ====

	''cctbx.xfel'' is installed for general users at SLAC and maintained by the ''cctbx.xfel'' team. Follow the [[Setup \| setup instructions for "cctbx.xfel"]], using the SLAC sources as described.		''cctbx.xfel'' is installed for general users at SLAC and maintained by the ''cctbx.xfel'' team. Follow the [[Setup \| setup instructions for "cctbx.xfel"]], using the SLAC sources as described.

Aaron at 21:59, 18 August 2014

2014-08-18T21:59:05Z

← Older revision		Revision as of 21:59, 18 August 2014
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	==== Set up ''cctbx.xfel'' ====		==== Set up ''cctbx.xfel'' ====

			''cctbx.xfel'' is installed for general users at SLAC and maintained by the ''cctbx.xfel'' team. Follow the [[Setup \| setup instructions for "cctbx.xfel"]], using the SLAC sources as described.

Aaron: First set of info for the workshop. Work in progress.

2014-08-18T21:55:08Z

First set of info for the workshop. Work in progress.

New page

We would like all users at the BioXFEL workshop to be using the same set of ''cctbx.xfel'' sources. To this end, please be sure you do not source any locally downloaded or installed ''phenix'' or ''cctbx'' versions in your .bashrc or .cshrc files. Instead, follow the instructions below to use the sources installed for general users at SLAC.

You may find the general [[overview]] to be useful first.

==== Set up PSDM ====

The Photon Science Data Management (PSDM) system provides pyana, and is required for reading the raw data saved by the CSPAD detector. Follow the instructions at [[Set up PSDM software]] first, using the PSDM suite installed at SLAC.

==== Set up ''cctbx.xfel'' ====