Stills target.phil

# -*- mode: conf -*-

distl_highres_limit = 3
force_method2_resolution_limit = 3

beam_search_scope = 0.5
difflimit_sigma_cutoff = 2
distl_minimum_number_spots_for_indexing = 30
lepage_max_delta = 3
model_refinement_minimum_N = 20
mosaicity_limit = 0.5
mosflm_rmsd_tolerance = 5
rmsd_tolerance = 5
distl_permit_binning=False

# Set to True to pick up second lattice, if present.
#indexing.outlier_detection.switch = True

# Suppress intermediate output files.
refinements_pickle = None
spots_pickle = None
subgroups_pickle = None

distl {
  bins.verbose = True
  res.outer = 3

  minimum_signal_height = 5
  minimum_spot_area = 2
  minimum_spot_height = 5
  spot_area_maximum_factor = 200
  compactness_filter = False
  method2_cutoff_percentage = 5

  # Avoids intensity filter.
  peak_intensity_maximum_factor = 10000
}

indexing {
  # Set to True to generate correction vectors.
  verbose_cv = True
}

integration {
  background_factor = 2
  detector_gain = 1

  model = user_supplied
  guard_width_sq=4
  spotfinder_subset=spots_non-ice
  greedy_integration_limit=True
  combine_sym_constraints_and_3D_target=True
  #enable_residual_map=True
  #enable_residual_scatter=True
  spot_prediction=dials
  # DECTRIS parallax
  signal_penetration = 0.5
  mosaic {
    refinement_target=ML
    kludge1=1.0 #normally 1.0, but sometimes set to 2.0 to increase indexing rate

    domain_size_lower_limit=4
    enable_rotational_target_highsym=False
    # plot delta psi vs. 2theta
    #enable_AD14F7B=True
    #enable_simplex=True
  }
  #montecarlo_integration_limit=2.5
}