Related changes
Jump to navigation
Jump to search
Enter a page name to see changes on pages linked to or from that page. (To see members of a category, enter Category:Name of category). Changes to pages on your Watchlist are in bold.
List of abbreviations:
- N
- This edit created a new page (also see list of new pages)
- m
- This is a minor edit
- b
- This edit was performed by a bot
- (±123)
- The page size changed by this number of bytes
9 October 2026
| N 22:28 | Cctbx.xfel GUI/Datasets tab diffhist +10,042 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI/Datasets tab}} The '''Datasets tab''' takes processed runs through to a merged reflection file. A '''dataset''' selects runs from a trial by tag and runs a pipeline of tasks over them: optional ensemble refinement, scaling, merging, and optionally Phenix. Each merge creates a new '''version''' of the dataset, and new versions keep appearing as further runs finish, so merged data are available while collection is still going on. Back to cc...") | ||||
| N 22:19 | Cctbx.xfel GUI/Unit Cell tab diffhist +3,608 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI/Unit Cell tab}} The '''Unit Cell tab''' plots histograms of the unit cell parameters of every indexed lattice in a trial, so that you can check that indexing is finding the expected cell, compare samples or conditions, spot polymorphs, and define unit cell clusters for the scaling stage of a dataset to filter on. The plot is redrawn every 15 seconds by the ''Unit Cell Sentinel'' while ''Auto update'' is ticked. Back to cctbx.xfel GUI....") | ||||
| N 22:18 | Cctbx.xfel GUI/Run Stats tab diffhist +6,057 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI/Run Stats tab}} The '''Run Stats tab''' is the live view of how processing is going: for each image of the selected runs it shows how many strong spots were found, whether the image indexed, to what resolution, and the photon energy, together with per-run hit and indexing rates. It is the tab to keep open during data collection. The plot is redrawn every 5 seconds by the ''Run Stats Sentinel'' while ''Auto update'' is ticked. Back to cctb...") | ||||
| N 21:34 | Cctbx.xfel GUI/Jobs tab diffhist +4,729 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI/Jobs tab}} The '''Jobs tab''' lists every job the GUI has submitted, with its status in the queuing system, and provides the controls for stopping, deleting and resubmitting jobs. While the tab is showing, the '''Job Monitor''' thread queries the queuing system every 10 seconds and updates the statuses. Back to cctbx.xfel GUI. == The job table == {| class="wikitable" ! Column !! Meaning |- | '''Job''' || The job's id in the database. A...") | ||||
| N 21:06 | Cctbx.xfel GUI/Trials tab diffhist +8,457 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI/Trials tab}} The '''Trials tab''' is where processing is set up. A '''trial''' is a numbered set of spot finding, indexing and integration parameters; each trial owns one or more '''run blocks''' that say which runs it applies to and how their images should be read. Making a trial ''active'' is what causes jobs to be submitted. Back to cctbx.xfel GUI. == Layout == Each trial is a box labelled with its number and the start of its commen...") | ||||
| N 20:58 | Cctbx.xfel GUI/Settings diffhist +9,966 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI/Settings}} The '''Settings dialog''' is the first thing the GUI shows when it starts (titled ''CCTBX.XFEL Login'') and is also opened by the '''Settings''' toolbar button. It collects everything the GUI needs to connect to an experiment: the database, the experiment tag, the facility, the output folder, and how jobs are submitted. All of it is saved as a project. Back to cctbx.xfel GUI. == T...") | ||||
| N 20:47 | Cctbx.xfel GUI diffhist +14,243 Aaron talk contribs (Created page with "{{DISPLAYTITLE:cctbx.xfel GUI}} The '''cctbx.xfel GUI''' is the graphical front end for processing serial crystallography data with cctbx.xfel and DIALS. It watches for new runs as they are collected, submits processing jobs to a cluster or to the local machine, records everything in a database, and shows live feedback on hit rates, indexing rates, unit cells and merging statistics. It can also take a finished set of runs through ensemble refinement, scaling and merging,...") | ||||