Difference between revisions of "Ha14 Tutorials"

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These tutorials assumes the steps outlined in [[setup]] have been followed first. Processing xfel data at LCLS consists of four steps:  
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THIS PAGE IS DEPRECATED.  This page details processing procedures described in [https://doi.org/10.1038/nmeth.2887 Hattne 2014] (Ha14), using LABELIT for initial indexing and stills-specific refinement and integration code implemented in the package ''cctbx.rstbx''
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Processing xfel data at LCLS consists of four steps:  
  
 
* Averaging and other [[Preparatory steps]]
 
* Averaging and other [[Preparatory steps]]
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* ''[[cctbx.prime]]'': Merging using the ''prime.postrefine'' program.
 
* ''[[cctbx.prime]]'': Merging using the ''prime.postrefine'' program.
 
* [[Resolving an Indexing Ambiguity]]
 
* [[Resolving an Indexing Ambiguity]]
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Processing outside of LCLS can be done by [[Indexing individual stills]]
  
 
Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.
 
Additionally, ''cctbx.xfel'' utilizes ''[[phil]]'' files to manage its configuration settings.
  
 
[[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper.
 
[[Processing L498 thermolysin]] details instructions to reproduce the results published in the forthcoming ''cctbx.xfel'' paper.

Latest revision as of 15:05, 6 November 2018

THIS PAGE IS DEPRECATED. This page details processing procedures described in Hattne 2014 (Ha14), using LABELIT for initial indexing and stills-specific refinement and integration code implemented in the package cctbx.rstbx

Processing xfel data at LCLS consists of four steps:

Processing outside of LCLS can be done by Indexing individual stills

Additionally, cctbx.xfel utilizes phil files to manage its configuration settings.

Processing L498 thermolysin details instructions to reproduce the results published in the forthcoming cctbx.xfel paper.