Configure cctbx.xfel from existing Phenix install
Much of the code to run cctbx.xfel is already bundled in the latest phenix installers. The only missing package is DIALS. Here's how to get cctbx.xfel configured from an existing Phenix installation.
Note: this only applies to processing individual stills. Functionality to read XTC streams from LCLS is not included when using this procedure.
Once Phenix is installed and sourced correctly:
cd <path to phenix installation>/modules svn co https://svn.code.sf.net/p/dials/code/trunk dials cd ../modules/build libtbx.configure xfel make make
prime.postrefine, one of the merging and scaling programs provided with cctbx.xfel requires scipy. This can be installed with this command:
libtbx.python -m easy_install scipy
On linux, this may require openssl to be installed, if it's not already:
yum install openssl098e