Difference between revisions of "2017 Tutorials"

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(10:15 am: Tutorials 2)
(Feb 16th)
 
(One intermediate revision by one other user not shown)
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9:00am: Session 1
 
9:00am: Session 1
Nick Sauter: Welcome and "Trials and tribulations merging still image data"
+
*Nick Sauter: Welcome and "Trials and tribulations merging still image data"
Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"
+
*Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"
Axel Brunger: "Data processing of XFEL data from a limited number of crystals"
+
*Axel Brunger: "Data processing of XFEL data from a limited number of crystals"
 +
 
 
10:20am: Break
 
10:20am: Break
 +
 
10:40am: Session 2
 
10:40am: Session 2
Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"
+
*Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"
Monarin Uervirojnangkoorn:  "Up and Running with Prime"
+
*Monarin Uervirojnangkoorn:  "Up and Running with Prime"
Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"
+
*Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"
James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"
+
*James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"
 +
 
 
Noon: Working Lunch - Roundtable discussion of data processing challenges
 
Noon: Working Lunch - Roundtable discussion of data processing challenges
 +
 
1:00pm: Session 3
 
1:00pm: Session 3
Graeme Winter and Richard Gildea:  "DIALS - new methods for processing X-ray diffraction data"
+
*Graeme Winter and Richard Gildea:  "DIALS - new methods for processing X-ray diffraction data"
James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"
+
*James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"
Jan Kern: TBD
+
*Jan Kern: "Challenges and Promises for serial crystallography of metalloenzymes at XFELs"
Franklin Fuller:  "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"
+
*Franklin Fuller:  "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"
Iris Young:  "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"
+
*Iris Young:  "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"
 +
 
 
2:40pm: Break
 
2:40pm: Break
 +
 
3:00pm: Session 4
 
3:00pm: Session 4
Aina Cohen: TBD
+
*Aina Cohen: "Serial crystallography approaches at LCLS-MFX and the SSRL micro-focus beamlines 12-1 and 12-2"
Rahel Woldeyes:  "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"
+
*Rahel Woldeyes:  "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"
Danny Axford: "Highly efficient serial data collection from high-density fixed targets"
+
*Danny Axford: "Highly efficient serial data collection from high-density fixed targets"
Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"
+
*Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"
Allen Orville: TBD
+
*Allen Orville:   "Time-resolved SFX with less sample, over longer reactions, and including complementary methods"
 +
 
 
= Feb 17th =
 
= Feb 17th =
  
Line 31: Line 38:
 
Break: 10:00 am
 
Break: 10:00 am
 
== 10:15 am: Tutorials 2 ==
 
== 10:15 am: Tutorials 2 ==
* Aaron Brewster and James Parkhurst: dials.stills_process
+
* Aaron Brewster and James Parkhurst: [[2017_dials.stills_process | dials.stills_process]]
 
* Art Lyubimov: IOTA
 
* Art Lyubimov: IOTA
* Monarin Uervirojnangkoorn: PRIME
+
* Monarin Uervirojnangkoorn: [[2017_prime_tutorial | PRIME]]
 
* Nick Sauter: [[2017_cxi_merge_tutorial | cxi.merge]]
 
* Nick Sauter: [[2017_cxi_merge_tutorial | cxi.merge]]
  

Latest revision as of 16:17, 1 March 2017

Feb 16th

9:00am: Session 1

  • Nick Sauter: Welcome and "Trials and tribulations merging still image data"
  • Aaron Brewster: "Metrology and non-isomorphism: hidden challenges in still image data reduction"
  • Axel Brunger: "Data processing of XFEL data from a limited number of crystals"

10:20am: Break

10:40am: Session 2

  • Art Lyubimov: "IOTA: Integration optimization, triage and analysis tool for XFEL data processing"
  • Monarin Uervirojnangkoorn: "Up and Running with Prime"
  • Jacques-Philippe Colletier: "Mosquito larvicide BinAB revealed by de novo phasing with an X-ray laser"
  • James Holton: "What if? Using at-scale image simulations to optimize data processing algorithms"

Noon: Working Lunch - Roundtable discussion of data processing challenges

1:00pm: Session 3

  • Graeme Winter and Richard Gildea: "DIALS - new methods for processing X-ray diffraction data"
  • James Parkhurst: "Robust background modelling in the presence of outliers in DIALS"
  • Jan Kern: "Challenges and Promises for serial crystallography of metalloenzymes at XFELs"
  • Franklin Fuller: "Drop-by-Drop Transient Serial Crystallography of Metalloenzymes at an X-ray free electron laser"
  • Iris Young: "Room temperature studies of the oxygen-evolving complex of photosystem II using an X-ray free electron laser (XFEL)"

2:40pm: Break

3:00pm: Session 4

  • Aina Cohen: "Serial crystallography approaches at LCLS-MFX and the SSRL micro-focus beamlines 12-1 and 12-2"
  • Rahel Woldeyes: "Using X-ray Free Electron lasers to visualize solvent in the M2 proton channel"
  • Danny Axford: "Highly efficient serial data collection from high-density fixed targets"
  • Christoph Mueller-Dieckmann: "Serial Synchrotron Crystallography at the ESRF using a high viscosity extruder"
  • Allen Orville: "Time-resolved SFX with less sample, over longer reactions, and including complementary methods"

Feb 17th

9am: Tutorials 1

Aaron Brewster and Iris Young: cctbx.xfel Break: 10:00 am

10:15 am: Tutorials 2

12:15pm-2:30pm: Round table discussion.

Topics will include: Is the current software meeting needs? What are essential/timely avenues most useful for near-term development (first half of 2017)? Where should we be going next (longer term future)? Time resolved experiments? Synchrotron serial crystallography?

2:30-4pm: Breakout sessions:

users work with developers and instructors on their own data. Hands-on walkthroughs and data analysis.