2014 Prerequisites

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We would like all users at the BioXFEL workshop to be using the same set of cctbx.xfel sources. To this end, please be sure you do not source any locally downloaded or installed phenix or cctbx versions in your .bashrc or .cshrc files. Instead, follow the instructions below to use the sources installed for general users at SLAC.

You may find the general overview to be useful first.

Set up PSDM

The Photon Science Data Management (PSDM) system provides pyana, and is required for reading the raw data saved by the CSPAD detector. Follow the instructions at Set up PSDM software, using the PSDM suite installed at SLAC.

Set up cctbx.xfel

cctbx.xfel is installed for general users at SLAC and maintained by the cctbx.xfel team. Follow the setup instructions for "cctbx.xfel", using the SLAC sources as described.